Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq880 711 0.0 >seq880 Length=74269 Score = 711 bits (788), Expect = 0.0 Identities = 747/981 (76%), Gaps = 6/981 (1%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||||| ||| || | || || || || |||| |||||||| || | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 8307 CATGATCCCAACCCTTCT---TGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGC 8363 |||||||| || || | ||| ||||| | | | |||| |||||| | ||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCAT---CGCATTTATCGCTGC 61209 Query 8364 TCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAA 8423 |||||| || || ||||| || ||||| || || ||| |||| || | | |||||||| Sbjct 61208 TCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAA 61149 Query 8424 CAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCC 8483 |||||||||||| ||||| |||||||| | || ||||| ||||| | || |||||||| Sbjct 61148 CAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCC 61089 Query 8484 CATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGT 8543 ||||||||||| |||||| | ||||||||| | |||||||||||||||||||| | || Sbjct 61088 AATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGT 61029 Query 8544 AGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTA 8603 || | || ||| || | || || | | |||| ||||||||||| |||||| | |||| Sbjct 61028 TGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTT 60969 Query 8604 CCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTC 8663 ||| | || |||||||| |||||| |||||| ||||| || || ||||| || ||| | Sbjct 60968 CCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTAC 60909 Query 8664 TGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGG 8723 ||||||||| | | || || | ||||||||||| ||||||||||||||||| | || Sbjct 60908 AGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGG 60849 Query 8724 TATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCA 8783 |||||| ||||| ||||||| |||||||| ||||| ||||||||||||||| | ||||| Sbjct 60848 TATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCA 60789 Query 8784 CCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCA 8843 ||| ||||| ||| | |||||||||||||| || || || || | || || || ||||| Sbjct 60788 CCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCA 60729 Query 8844 TGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTA 8903 |||||||| || |||||||| | | ||||| || || |||| ||| || ||| | Sbjct 60728 CGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGA 60669 Query 8904 TGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTT 8963 || ||||| || ||||||||||| |||||||||||||| || || |||||||| ||||| Sbjct 60668 AGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTT 60609 Query 8964 TGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCT 9023 |||||| || ||||||||||| || || |||||||| ||| | || || |||||| | Sbjct 60608 TGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTT 60549 Query 9024 CGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTT 9083 ||||| ||||| || || || || ||||| || || | || | || || ||||| || Sbjct 60548 AGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATT 60489 Query 9084 CAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAA 9143 ||| | ||||| |||||||||||||| || || | || |||||| || || |||| Sbjct 60488 TAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAA 60429 Query 9144 CACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAA 9203 ||| ||||| || | ||||||| || | ||||| ||||| ||||| |||||||| Sbjct 60428 CACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAA 60369 Query 9204 CGCACACAACTTCCCGCTTGA 9224 || |||||||| || ||||| Sbjct 60368 TGCTCACAACTTTCCACTTGA 60348 Score = 453 bits (502), Expect = 1e-122 Identities = 699/994 (70%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 || ||||| |||||||||||||| || ||||| || || ||||| ||||||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 || | | || || ||||||| | ||| | ||||||||| | ||||| | ||| ||| Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| || || || | || | | | || ||| ||||||| | Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 ||||| || || || || ||||| || |||||||||||| | | || | ||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 || || | || || || || || ||| || | || || | ||| ||||||| Sbjct 49743 CCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTT 49802 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || | || || | || |||||||| || ||||||||||| || |||||| | || | Sbjct 49803 GCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT 49862 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | | | ||| || || || || || ||||| || || | || ||||| ||||| || Sbjct 49863 TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTA 49922 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 |||||| | |||||||| | || || ||| | ||||||||||| || ||||| || Sbjct 49923 TCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGT 49982 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || || || ||||| || | || ||| |||| || || ||||| ||||| | || Sbjct 49983 GTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAAC 50042 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || |||||||||||||| || |||||| | | || | ||| | |||| || ||||| Sbjct 50043 CCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCAT 50102 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||||||| | | | ||||||| || ||||| || ||| || Sbjct 50103 GGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCA 50162 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 50163 TTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCA 50222 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| | || ||| |||||||| ||| | |||||||||||| | |||||| Sbjct 50223 CAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 50282 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | | ||||| | | ||| | ||| | || | ||| Sbjct 50283 CCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGT 50342 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || ||||||||||||||||| || | || | |||||||||||||| || || ||| Sbjct 50343 GCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTC 50402 Query 10715 TATACGAAGAAT-ATCCTTCTGA-ACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 ||||| || ||| || || | | | |||||| |||| || |||||||| | || | Sbjct 50403 TATACAAAAAATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATC 50460 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGT 10806 | || || |||| || || |||||||| || || Sbjct 50461 AGCCTCATGAAAAATTAGTATTCCCAGAGGAGGT 50494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 15399 TATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTC 15458 |||||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| Sbjct 35558 TATCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTC 35499 Query 15459 AAATCCTGTATTCCCGA 15475 |||||||| |||||| Sbjct 35498 GAATCCTGTCATCCCGA 35482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516474318720000