Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq189 170 1e-36 seq191 114 8e-20 seq634 100 2e-15 seq779 96.9 2e-14 seq429 96.9 2e-14 seq354 96.9 2e-14 seq430 91.5 1e-12 seq215 87.8 1e-11 >seq189 Length=39166 Score = 170 bits (188), Expect = 1e-36 Identities = 370/546 (68%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 474338 ATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATA 474397 |||||||| ||||| || ||| ||||| | || ||||| |||| | ||| || || Sbjct 5434 ATTGATTTGGGAACAACCTACTCCTGTGTTGGAGTGTGGCAGAATGACAGAGTGGAGATT 5493 Query 474398 ATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAA 474457 ||| | ||||| || ||||| ||||| || ||||| |||||| | || || || || || Sbjct 5494 ATTCCAAATGAGCAGGGTAACAGAACTACCCCATCGTATGTTGCCTTCACCGATACCGAG 5553 Query 474458 CATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAATACTATTTT 474516 | | | | ||||||||||| || ||| || || ||| || || || || | || Sbjct 5554 CGTTTGGTAGGAGATGCTGCCAAGAATC-AGGTGGCTCTCAACCCACACAACTCTGTGTT 5612 Query 474517 TGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCG 474576 ||||| || | |||||||| || || |||||||| | ||||||| ||||||| | Sbjct 5613 CGATGCCAAGCGTTTGATTGGACGCAAGTTTGATGAGCCAGCTGTCCAGCATGATATGAG 5672 Query 474577 TCATTGGCCTTTTAAGGTGATAAA---TGTTGGTGGTAAACCA--TATATAGAAGCAATA 474631 || ||||| || |||||| | || || ||| | || ||| || || | || Sbjct 5673 CCACTGGCCATTCAAGGTGGTCAAGGGTGCTGGAGACAAGCCAATGATCCAGGTGACCTA 5732 Query 474632 CACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691 || | | ||| || ||| || || || | |||||||| ||||| | | || Sbjct 5733 CAAGAA--CGAAGAGAAGACATTCTCTCCAGAGGAGATTTCTTCCATGGTCCTTGGAAAG 5790 Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGT 474750 ||||| | || ||| | || || ||| ||| || | || || | ||||| Sbjct 5791 ATGAAGGAGGTAGCAGAG-ACCTACCTCGGAGGAGAGGTGCAGCAGGCTGTGGTGACTGT 5849 Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810 ||||| || || || |||||||| | || ||||| || ||||| || ||||| || Sbjct 5850 GCCAGCCTACTTCAACGATTCTCAGAGACAGGCAACCAAGGATGCCGGTGTGATTGCTGG 5909 Query 474811 TCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGA 474870 || | || | ||||||||||| || |||||||||||||| | || |||||| | || Sbjct 5910 ACTCGAGGTGCTTCGTATTATTAACGAGCCAACAGCAGCCGCTATCGCCTATGGTTTGGA 5969 Query 474871 TAAGAA 474876 ||||| Sbjct 5970 CAAGAA 5975 Score = 105 bits (116), Expect = 4e-17 Identities = 306/466 (66%), Gaps = 4/466 (1%) Strand=Plus/Plus Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 ||||| || | |||||||| ||||| || || | |||||||| | || | | || Sbjct 6409 GTCCACGATGTGGTTCTTGTCGGAGGATCCACCCGTATTCCAAAGGTGC-AGCAGTTGTT 6467 Query 475754 TCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 | | || || ||||| || | || || | || | || || ||||| |||||||| Sbjct 6468 GAGTGACTACTTCAATGGAAAGGACTTGAACAAGAGCATCAACCCAGATGAGGCTGTTGC 6527 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAA 475872 ||||||||||||||||| ||||| || | | ||| || || ||||||| || | | Sbjct 6528 CTATGGAGCTGCTGTCCAGGCAGCCATCCTCACTGGTGAAACACACGAGAAGGTACAGGA 6587 Query 475873 TATTGTACTTGTT-GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 | | | ||||| || || |||||||| || | |||||||| || | |||||| | | Sbjct 6588 T-CTCTTGTTGTTGGATGTGACTCCACTGTCTCTTGGTCTTGAGACTGCTGGAGGAGTGA 6646 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991 |||| | | || | | || || | || ||| |||||| | | || || |||| Sbjct 6647 TGACCACATTGATCCAGCGTAACACCACCATTCCAGCCAAAAAGGAACAGGTCTTCTCCA 6706 Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051 | ||| ||||||| || || || ||||| | |||||||| || | | Sbjct 6707 CATATGCTGATAACCAGCCAGGAGTGCTTATCCAGGTGTTTGAAGGAGAGCGTGCCCGTA 6766 Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111 || || || || || |||| || | || || || || ||||| || | | Sbjct 6767 CTTCTGAGAACCACTTGCTCGGAAAGTTCGAACTCAGTGGAATCCCACCTGCACCGCGTG 6826 Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTAT 476157 | || || || ||| || || |||||||||||||| || ||||| Sbjct 6827 GTGTGCCACAGATTACCGTGACATTTGATATTGATGCCAACGGTAT 6872 >seq191 Length=305721 Score = 114 bits (126), Expect = 8e-20 Identities = 364/558 (65%), Gaps = 26/558 (5%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| || ||| | ||||| || || |||||| | || | | ||||||||||| Sbjct 43965 ATTGGAATCGATCTTGGAACGACCTATTCTTGTGTTGGAGTGTATAAGAATGGTAAAGTC 43906 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || || ||||||| || || || || || | |||||||| Sbjct 43905 GAGATCATTGCCAACGATCAGGGAAATAGAATCACTCCCTCGTACGTGGCGTTTACTGAC 43846 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 |||| | | | |||||||| ||||| || |||| || | || || || || ||| Sbjct 43845 TCTGAGCGTTTGATTGGAGACGCTGCAAAGAATCAGGCCACGTCCAACCCAACTAGAACT 43786 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | | ||||| || ||||||||||| | || || | ||| | || || || Sbjct 43785 GTGTATGATGTGAAGAGATTGATTGGAAGGAACTTCAAGGATGCAGAGGTGCAGAAGGAC 43726 Query 474572 ATGCGTCATTG--GCCTTTTAAGGT----GATAA-ATGTTGGTGGTAAACCATAT----- 474619 | | | ||| | ||| ||| | || || | || || || ||| Sbjct 43725 AAGGAT--TTGGTGTCTTACAAGATTGTGGACAACAAGT-----CAAAGCCCTATGTTAG 43673 Query 474620 -ATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | || | | ||| | ||| || | || |||||| || || | |||||| | || Sbjct 43672 GGTGGACGTGA-ACAAGGAGG----ACAAGAC-ATTTTCGCCCGAGGAGATTTCTGCCAT 43619 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||| || | || ||||| | || || | ||||| || | ||||| | |||| Sbjct 43618 GGTGTTGACAAAGATGAAGGAGACTGCCGAAGCGTATCTGGGTAAGGAAGTCAAGCATGC 43559 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || | ||||| |||||||| ||||||||| | || | || || || || ||||| || Sbjct 43558 TGTGGTGACTGTGCCAGCATACTTTAATGATGCACAGAGACAGGCCACCAAGGATGCAGG 43499 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| ||| | || || | |||||||| || || || || || || ||| |||| Sbjct 43498 TACTATTGCTGGTTTGAACGTGGTGCGTATTATCAACGAGCCTACTGCGGCTGCAATTGC 43439 Query 474859 TTATGGTCTTGATAAGAA 474876 |||||| | || ||||| Sbjct 43438 CTATGGTTTGGACAAGAA 43421 >seq634 Length=251403 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| |||| || | |||||| | ||||||||||| ||||| | ||| || Sbjct 209599 TTATAATCTGCTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGC 209540 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| |||||||| |||||||| |||||||| |||||| ||| ||||| ||| Sbjct 209539 TGATCAGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCA 209480 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || ||||| || || || || ||||| Sbjct 209479 GAAGACTCCA-CCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTG 209424 >seq779 Length=187291 Score = 96.9 bits (106), Expect = 2e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||| ||||| || |||||||||||||| | || || || || ||||| Sbjct 104336 GCTGTGATTACTGTCCCAGCTTACTTTAATGATTCTCAGAGACAGGCTACGAAGGATGCT 104395 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||| | | || | |||||||| ||||| || || || || | | Sbjct 104396 GGTAAGATTGCTGGTTTGGAAGTGCTTCGTATTATCAATGAGCCTACTGCTGCATCTTTG 104455 Query 474857 GCTTATGGTCTTGATAAGAATTC 474879 || ||||||||||||||||| || Sbjct 104456 GCCTATGGTCTTGATAAGAAGTC 104478 >seq429 Length=364352 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| || || || | |||||| | ||||||||||| ||||| | | || Sbjct 146990 TTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGC 146931 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || || || || || || |||||||| |||||| ||||| |||||| Sbjct 146930 TGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCA 146871 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | ||| || ||||||||||| || || || || ||||||||||| || Sbjct 146870 GATGACTCTA-CTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTG 146815 >seq354 Length=2136 Score = 96.9 bits (106), Expect = 2e-14 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| |||||||| || ||||| || |||||||| ||||| |||||||| Sbjct 2007 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTT 2066 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||| |||||||| |||||| |||||| ||||||| Sbjct 2067 GTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAG 2104 >seq430 Length=82441 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||| || ||||| |||||| ||| | || || || || ||||| ||||||| Sbjct 80007 TTACTGTTCCTGCGTATTTCAATGATCATCAGAGGCAGGCTACCAAGGATGCTGGAAGAA 79948 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT-TGCTTAT 474862 ||||||| | |||| | ||||| || ||||| |||||||| || || || ||| ||| Sbjct 79947 TTGCAGGGTTGGATGTGCTCCGTATCATCAATGAGCCAACAGCGGCAGCGCTGTGC-TAT 79889 Query 474863 GGTCTTGATAAGAA 474876 || |||||||| Sbjct 79888 GGATCAGATAAGAA 79875 >seq215 Length=26802 Score = 87.8 bits (96), Expect = 1e-11 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||| || ||||| |||||| ||| | || || || || ||||| ||||||| Sbjct 8541 TTACTGTTCCTGCGTATTTCAATGATCATCAGAGGCAGGCTACCAAGGATGCTGGAAGAA 8482 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT-TGCTTAT 474862 ||||||| | |||| | || || || ||||| ||||||||||| || || ||| ||| Sbjct 8481 TTGCAGGGTTGGATGTGCTCCGCATCATCAATGAGCCAACAGCAGCAGCGCTGTGC-TAT 8423 Query 474863 GG 474864 || Sbjct 8422 GG 8421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268141452530240