Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq880 672 0.0 >seq880 Length=74269 Score = 672 bits (744), Expect = 0.0 Identities = 742/986 (75%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||||| || ||||| || ||||| | || | |||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 160936 ATGATTCCCTGCT-TGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| |||| || | | |||| || | |||||||| || || | | |||||| Sbjct 61264 ATGAT-CCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || ||||| || || ||||| || || ||||||| | | || || ||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||||||||| ||||| ||| | || |||| ||||| || ||| | || |||||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 ||||||||| || | | || || ||| | |||||||||||||||| |||| | ||||| Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | || ||| | | || | | | ||||||||||||||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 | | || |||||||| ||||| || || ||||| || || || |||||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| | | || || |||||||||||||||||||||||| ||||| | || || Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 ||| ||||| ||||||| ||||||||| |||||||| ||||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 ||||||||| | || || || ||||| ||||| ||||| | ||| || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| || || || ||||| | | |||||||| || |||||||| || ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 |||||| || |||||||||||||| || ||||||||||| ||||| || || ||||| || Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 |||| | || |||||||||||||| || |||||||| || || | ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 ||||||||| || ||||| || ||||||||||| | || | || |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 | | |||||||||||||||||||| || | || ||| || ||| || |||||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 ||||| || || | ||||||||| | || || ||||| ||||| || | ||||| Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 161835 TCACAACTTCCCTCTTGACCTTGCTG 161860 ||||||||| || ||||| | |||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTG 60340 Score = 504 bits (558), Expect = 8e-138 Identities = 723/1010 (72%), Gaps = 14/1010 (1%) Strand=Plus/Plus Query 162127 TTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 162186 |||| ||||||||| | || |||||||| ||||| || |||||||| || || || Sbjct 49513 TTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT-TTATTATTA 49571 Query 162187 TTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGT 162245 || || ||||||| | || | || || ||| | ||||| | ||| || || || Sbjct 49572 TTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCA 49631 Query 162246 TGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGC 162304 |||||||| || || | || ||| | | | || ||| || ||||||| | || || Sbjct 49632 TGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGC 49690 Query 162305 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTC 162364 ||||||||| || ||| | |||||||||||| | | | ||||||| || || | Sbjct 49691 AGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGC 49750 Query 162365 TCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCA 162424 ||||| ||||| | || ||||| ||| | || || | ||||||||||| || | || Sbjct 49751 ACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACA 49810 Query 162425 CGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGG 162484 || | ||||| | || ||||| ||| | || || ||||| | ||||| || | Sbjct 49811 TGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT----TCAG 49866 Query 162485 TA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTG 162540 || ||||||| || || || || |||||||||| || ||||| || ||||| | Sbjct 49867 TAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAG 49926 Query 162541 TTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCG 162600 |||| | ||||||||||| || ||||| ||||||||| ||||| || || || | Sbjct 49927 TTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTG 49986 Query 162601 CAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTT 162660 | |||||||||||||| | || ||| ||||||| |||||||||||||| |||| || | Sbjct 49987 CCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCAT 50046 Query 162661 TTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAG 162720 | || |||||||| ||||| ||| | | |||| || || || | |||||| ||||| | Sbjct 50047 TCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTG 50106 Query 162721 TGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTG 162780 || || ||||| ||| | | |||||||| || ||||| || || |||||| Sbjct 50107 CAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTA 50166 Query 162781 ACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGA 162840 || | || || | |||||||| ||||| ||||| |||||||| || ||||||||||| | Sbjct 50167 ACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAA 50226 Query 162841 TTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCG 162900 |||| ||| | || ||| || || |||||||| |||||||||||| | ||||| || | Sbjct 50227 TTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAG 50286 Query 162901 TCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTT 162960 | | ||| | |||| ||| | || || | | || | ||| | || | ||||| | Sbjct 50287 TAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCAT 50346 Query 162961 ACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATA 163020 | || ||||||||||||||| ||||||| || ||||| ||||| || || || ||||||| Sbjct 50347 ATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATA 50406 Query 163021 CAAAGAA-CATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCT 163079 |||| || |||| | | ||||||| ||||||| ||| | || | || || ||| Sbjct 50407 CAAAAAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCT 50465 Query 163080 CATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 ||||| || || || ||||| || ||||| || ||| | || |||||||| Sbjct 50466 CATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 35555 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 35496 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 35495 TCCTGTCATCCCGA 35482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547741174780800