Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq880 621 5e-173 >seq880 Length=74269 Score = 621 bits (688), Expect = 5e-173 Identities = 723/985 (73%), Gaps = 0/985 (0%) Strand=Plus/Plus Query 103173 CAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGAC 103232 |||| | ||||| || ||||||||||| || | || ||||| ||||| ||||| | Sbjct 60340 CAGCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGT 60399 Query 103233 CAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGG 103292 ||| ||||| | || || ||||| ||||| | |||||||| || ||| | | | Sbjct 60400 TAGCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTG 60459 Query 103293 ACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGA 103352 | |||||||||||||| || || | ||| || ||||| || || ||| | || |||| Sbjct 60460 ATTGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGA 60519 Query 103353 ACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGA 103412 |||| ||||| |||||||| | |||||||| | Sbjct 60520 ACCAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAA 60579 Query 103413 ATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATG 103472 |||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| | Sbjct 60580 ATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAG 60639 Query 103473 TCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC 103532 | ||||| ||||| || || |||||||| | ||| ||||| ||||||| || |||| Sbjct 60640 TTTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCAC 60699 Query 103533 GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGA 103592 | | | || || || ||||| |||||||||||||| ||| | ||||||||| || | Sbjct 60700 GGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATA 60759 Query 103593 CTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGA 103652 | |||||||| || | ||| ||||| |||||||| | ||||| || || |||||||| | Sbjct 60760 CACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATA 60819 Query 103653 CCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTT 103712 | |||||| ||||||| || || || ||||| || |||||| |||| ||||| ||||||| Sbjct 60820 CAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTT 60879 Query 103713 GACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGA 103772 |||| | ||||| | | |||||| || | || || ||||| || || ||||| || | Sbjct 60880 GACCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAA 60939 Query 103773 CACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATG 103832 || |||||| || ||||| || | |||| | || |||||||||||||| ||||| || | Sbjct 60940 CAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAG 60999 Query 103833 CATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCC 103892 | | | || | || ||| || |||| || | |||| ||||||||||||| || | || Sbjct 61000 AACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACC 61059 Query 103893 ACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGG 103952 ||||||| | ||| || |||||||| || || ||||| || | |||||| ||||| || | Sbjct 61060 ACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAG 61119 Query 103953 AGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTT 104012 |||||||| ||||| |||||||||||||||||||| | | |||||||| || || | Sbjct 61120 TTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCT 61179 Query 104013 CACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGG 104072 |||| || || |||||||| || ||||| || || | || || | |||||| | | Sbjct 61180 CACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAG 61239 Query 104073 TTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGT 104132 |||| | || ||||| |||||||| | ||||| |||||||| | || | |||||| | Sbjct 61240 TTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTT 61299 Query 104133 TTGTCGATGTAACCCACTCGCAGAA 104157 || || |||||||| || || Sbjct 61300 CAGTGCTAGTTACCCACTCACAAAA 61324 Score = 529 bits (586), Expect = 2e-145 Identities = 733/1018 (72%), Gaps = 10/1018 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| |||||||| || || ||||| || |||||||| || ||||| Sbjct 50515 AGAGCGTTTCCACGTGGTAATACCTCCTCTGGGAATACTAATTTTTCATGAGGCTGATCT 50456 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATG-TTCTTTGTGTAGAACGT 101828 | |||| ||| || || | |||||||| |||| ||| || ||||| ||||| || Sbjct 50455 TGAGCAGCCATCCAAGCTCGAACACCTTCATCTAATAA-ATGATTTTTTGTATAGAAAGT 50397 Query 101829 CTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAG 101888 ||||| || |||||||| || || | || ||||| |||||||| ||||| ||||| | Sbjct 50396 TTCGAATTCAGGATCTTCCGCAGCACGAATTTCTTGAGATACAAAATCATATGCACGTAA 50337 Query 101889 GTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAA 101948 ||| | ||| | ||| | | || || | ||| |||| | ||| | || || ||||| Sbjct 50336 GTTTAAAGCTAAACCTACTACGCCAATTGCACTCATCCATAAACCAGTTACTGGTACAAA 50277 Query 101949 GAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCA 102008 | |||||||||||| ||||| | ||||| |||||| | |||||| ||||| ||||| Sbjct 50276 TAACATAAAGAAATGTAACCAACGTTTATTTGAAAATGCTACACCAAAAATTTGTGACCA 50217 Query 102009 GAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTT 102068 |||||| || || || ||||||||||| || ||||| |||| || | | ||||| Sbjct 50216 GAAACGATTCGCAGTTACCATTGAATATGTTTCTTCAGCTTGAGTTGGGTTAAATGCACG 50157 Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| || ||||| ||||||||||||| | | ||||| || ||||| |||| ||||| Sbjct 50156 GAATGTATTTGCACCATCACCATCTTCAAATAATGTGTTTTCTACAGTTGCACCATGGAT 50097 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAG 102188 || | || | ||| | || | | ||| || ||||||||||||||||||||||| | Sbjct 50096 AGCACATAGTAACGCTGCACCTAAAACACCAGCTACACCCATCATATGGAATGGGTTTAA 50037 Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 |||||||||||||| || || | ||| || | |||| || || || ||||||||||| Sbjct 50036 AGTCCAGTTATGGAAACCTTGGAAGAATAGGATAAATCGGAAGATTGCGGCAACACCAAA 49977 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGA-GAAACACACTGACA- 102306 || ||||||||||| | || || || | ||||||||| | |||| ||||| | Sbjct 49976 ACTTGGTGCAAAGAACCAGCCAGATTGACCTAAAGGATAGATTAAGAAA---ACTGATAC 49920 Query 102307 -AAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCT 102365 ||||| || || || | ||||| || || || || || ||||||||| | | | | Sbjct 49919 GAAAACTGCAATTGGTGCTGAGAAAGCGATTGCGTTATATGGACGAATTTTTACTGAACG 49860 Query 102366 AGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCAC 102425 || | ||| |||||||| | ||| |||||||| | ||||||| ||| || | || || Sbjct 49859 TGCAATCTCAAATTGACGTAACATAAAACCAATTAAAGCAAATGAACCATGTAATGCAAC 49800 Query 102426 AAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA-TCTCCTTGAGCTTCAGGAC 102484 ||||| ||| | || || | ||| ||| | || ||| || ||||| ||||| || | Sbjct 49799 AAAAGTCCATAAACCACCTAATTGACACCAAC-GAGTAAAGTCGCCTTGTGCTTCTGGGC 49741 Query 102485 CCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAA 102544 |||| | || | | |||||||||||| | ||||| || || || |||||||| | Sbjct 49740 CCCATAATAATAATAATGAATGACCCATACTATTTGCAGGTGTAGAAACTGCAGCTGTTA 49681 Query 102545 GGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAA 102604 ||||||| |||||| | | ||| || | || || |||||||| || ||| ||| Sbjct 49680 AGAAATTACAACCTTCTAAAAATGAAGAAGCTAAACCATGTGTATACCATGATGTAACAA 49621 Query 102605 ACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTC 102664 | || | ||||| | |||||| || | ||| | ||||||| || || | | || | Sbjct 49620 ATGTAATTCCAGTTAACCAGCCACCTAATGCTAAATAAGCACAAGGTAATAATAATAAAC 49561 Query 102665 CAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||||| ||||| || || ||||| || || ||||||||| | ||||| || Sbjct 49560 CAGACCAACCTACAAATACGAAACGATCACGACGAAGCCAGTCATCAACAATGTCGAA 49503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633506631350400