Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq880 562 9e-156 >seq880 Length=74269 Score = 562 bits (622), Expect = 9e-156 Identities = 713/978 (73%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 ||||| || |||||||| || || | |||||||| || |||| || | ||| |||||| Sbjct 60348 TCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTAGCACGG 60407 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 |||| ||| |||||||| |||||||| || | || | | | ||| | |||||||| Sbjct 60408 TTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTTG 60467 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||||||||| ||||| || ||||| || || | || | |||| ||||||||| Sbjct 60468 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATA 60527 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 || || || ||||| ||||| | ||||| || | ||| || || ||||| ||| Sbjct 60528 CCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAATGAAGCG 60587 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| | |||||||| || || |||||||| || || |||||||| ||||| Sbjct 60588 TATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 60647 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 ||||||||||| |||||||| | ||| ||| | | |||||| || ||||| || | | Sbjct 60648 TCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGGATTAAT 60707 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || || |||||||||||| ||||| || ||||||||||| || || Sbjct 60708 GAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACACCAGCA 60767 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||| | ||| || || || ||||| | || ||||||||||| ||||| || |||||| Sbjct 60768 ACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACAAGCATG 60827 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 ||||||| || || || || || || |||||| ||||||| ||||| || || || | Sbjct 60828 AAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGACCGATT 60887 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 || |||| | ||| ||||| || || || || || || || ||||| |||||| |||| Sbjct 60888 GGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACAGCGATC 60947 Query 22077 CAGGGCCTCATCCCTAGTC-GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 || || | ||| |||| | || || ||| ||||||||| || |||||||||| | | || Sbjct 60948 CATGGACGCATACCTAAACGGAAAGATAA-TTCCCACTCACGACCCATGTAAGAACATAC 61006 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 || | || ||| || |||| | |||| | ||||| |||||||| | ||| ||||| Sbjct 61007 ACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCACTCATC 61066 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 | | |||||||||||| ||||||||||| |||| || || || || | ||||| Sbjct 61067 TAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTTGGAAC 61126 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 || || ||||| |||||||||||||| || || | || |||| || || || ||||| Sbjct 61127 AACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCACGGAT 61186 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGGC 22375 |||||||| ||||| || || || | | ||| ||||| || || || || || | Sbjct 61187 ACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTTGCAGT 61246 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGA 22435 | || || ||||| | || || ||||| || | || | |||||| | ||| Sbjct 61247 TAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCAGTGCT 61306 Query 22436 GGTGACCCAGGAACAAAA 22453 || ||||| |||||| Sbjct 61307 AGTTACCCACTCACAAAA 61324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206472126400