Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq880 699 0.0 seq229 123 3e-23 >seq880 Length=74269 Score = 699 bits (774), Expect = 0.0 Identities = 747/984 (76%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || || | || | | ||| ||||||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| |||||||||||||| ||||| |||||||| || | ||||| | || || ||| Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || || || || || | |||| ||||||||| | | |||||||| ||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 ||||| || |||||||| | ||||||||||||||| || || ||||| |||||||| ||| Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||||||||| || || || ||||| | ||| ||| || | || || ||||| | | Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGG 60701 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 |||| ||||| || ||||| ||||| ||||| ||||||||||| || || || || | Sbjct 60702 ATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 60761 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || || || ||| ||| ||||| || ||||||| ||||| ||||| |||||||| || Sbjct 60762 CCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 60821 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||| |||||||||||||| | |||||||||||||||||| ||||| ||| Sbjct 60822 AGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGA 60881 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | | ||||||||| || |||| ||||||||||| ||||||||| Sbjct 60882 CCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACA 60941 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||| |||||||| ||||| | | | |||| |||||||| | |||||||| | Sbjct 60942 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAA 61001 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||| | | ||| || | | || || || ||||||||||| || || ||||| Sbjct 61002 CATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCAC 61061 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 ||||| | || || |||||||||||||||||||| |||| || || |||||||| | | Sbjct 61062 TCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTT 61121 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||||||| ||||| ||||||||||||||||| ||||| || ||||| | || || || Sbjct 61122 GGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCA 61181 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCT 124948 | ||| || |||||||| || ||||| || || |||||||| | |||||| || | | Sbjct 61182 CGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTT 61241 Query 124949 GCTGTGAGTA-AGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 || || | || || | || ||||||| |||||||||||||| | || | | ||| | Sbjct 61242 GCAGTTAATAGAGTA-GGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTC 61300 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||||||||||||| || Sbjct 61301 AGTGCTAGTTACCCACTCACAAAA 61324 Score = 497 bits (550), Expect = 1e-135 Identities = 742/1047 (71%), Gaps = 27/1047 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||| || || ||||| || || Sbjct 50519 TTAAAGAGCGTTTCCACGTGGTAATACCTCCTCTGGGAATACTAATTTTTCATGAGGCTG 50460 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCAT-TAAGAAGAATG-TTCTTCGTATAG 122983 || || | |||||| |||| | ||||||| ||| || ||| || || |||||| Sbjct 50459 ATCTTGAGCAGCCATCCAAGCTCGAACACCTTCATCTAATAA--ATGATTTTTTGTATAG 50402 Query 122984 AAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCT 123043 ||||| ||||| || || ||||| || || | || |||||||||||||| || ||||| Sbjct 50401 AAAGTTTCGAATTCAGGATCTTCCGCAGCACGAATTTCTTGAGATACAAAATCATATGCA 50342 Query 123044 CTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGA 123103 | | ||| | |||| |||||| | || || | |||| | ||| | || || Sbjct 50341 CGTAAGTTTAAAGCTAAACCTACTACGCCAATTGCACTCATCCATAAACCAGTTACTGGT 50282 Query 123104 ACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGT 123163 || || ||||||| ||| ||||| | | ||| || |||||||| | |||||| || ||| Sbjct 50281 ACAAATAACATAAAGAAATGTAACCAACGTTTATTTGAAAATGCTACACCAAAAATTTGT 50222 Query 123164 GACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAAT 123223 |||||||| | ||||| || | ||| ||| |||||||| | || || || | ||| Sbjct 50221 GACCAGAAACGATTCGCAGTTACCATTGAATATGTTTCTTCAGCTTGAGTTGGGTTAAAT 50162 Query 123224 GCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAAT 123283 || | ||| |||| ||| | || ||| || ||||| | ||| Sbjct 50161 GCACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAT 50123 Query 123284 GTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCA 123343 ||||| | || ||||||||||| || ||||||||||| ||| |||||| | || || Sbjct 50122 GTGTTTTCTACAGTTGCACCATGGATAGCACATAGTAACGCTGCACCTAAAACACCAGCT 50063 Query 123344 ACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATA 123403 ||||||||||| || ||||| || || || ||| ||||||||||| | ||||| |||| Sbjct 50062 ACACCCATCATATGGAATGGGTTTAAAGTCCAGTTATGGAAACCTTGGAAGAATAGGATA 50003 Query 123404 TAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGT 123463 | || |||||||| || ||||| || |||||| |||||||| | ||||||| Sbjct 50002 AATCGGAAGATTGCGGCAACACCAAAACTTGGTGCAAAGAACCAGCCAGATTGACCTAAA 49943 Query 123464 GGATAGATCA-GAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTT 123522 |||||||| | |||| || || ||| ||||| || || ||||| |||| |||||| Sbjct 49942 GGATAGATTAAGAAAACTGATAC-GAAAACTGCAATTGGTGCTGAGAAAGCGATTGCGTT 49884 Query 123523 GTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAG 123582 || || | ||| ||| | ||| ||||||||||| | | ||| ||||| || | Sbjct 49883 ATATGGACGAATTTTTACTGAACGTGCAATCTCAAATTGACGTAACATAAAACCAATTAA 49824 Query 123583 TCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAAC 123642 |||| ||||||||||| ||||| |||||| ||| || | ||| |||||||| Sbjct 49823 AGCAAATGAACCATGTAATGCAACAAAAGTCCATAAACCACCTAATTGACACCAACGAGT 49764 Query 123643 GAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 || ||||||||||| || ||||| | || | | ||||||||| | | Sbjct 49763 AAAGTCGCCTTGTGCTTCTGGGCCCCATAATAATAATAATGAATGACCCATACTATTTGC 49704 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 |||||| || ||||| ||||||||||| || || || | | ||||||| || | ||| Sbjct 49703 AGGTGTAGAAACTGCAGCTGTTAAGAAATTACAACCTTCTAAAAATGAAGAAGCTAAACC 49644 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 ||||||||||||||||||||| || ||| |||| ||||| ||||| | || || ||| Sbjct 49643 ATGTGTATACCATGATGTAACAAATGTAATTCCAGTTAACCAGCCACCTAATGCTAAATA 49584 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 |||||||| | | ||| | ||||||||| |||| ||||| |||||||| | | Sbjct 49583 AGCACAAGGTAATAATAATAAACCAGACCAACCTACAAATACGAAACGATCACGACGAAG 49524 Query 123883 CCAGTCGTCAAGAACATCAAACCAACC 123909 |||||| |||| || || || |||| Sbjct 49523 CCAGTCATCAACAATGTCGAATAAACC 49497 >seq229 Length=92098 Score = 123 bits (136), Expect = 3e-23 Identities = 441/677 (65%), Gaps = 28/677 (4%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || || || | || || ||||| |||||||| ||||| ||||||||||| || Sbjct 26880 ACTCCGATTGGTCCCATACCTGGCCCTCCCCCTCCATGAGGAATGCAGAATGTCTTGTGG 26821 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| || ||||| |||||| ||| ||| | | ||||| || ||| Sbjct 26820 AGATTCAAATGGCAAACATCAGCACCAATCACACCTGGAGCAGTCAATCCTACTTGGGCA 26761 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | || |||||||||||||| ||||| | || || || ||| Sbjct 26760 TTCATGTTGGCACCATCCATGTAGACCTGACCACCATTCTCATGGATAATGTTGCAGATC 26701 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | | |||| | |||||||| || |||||||||||||| |||||| Sbjct 26700 TCATCAACGCCATCTTCATACACACCATGTGTAGATGGATATGTAAT-------CATGAG 26648 Query 138423 AGTT--CAAA-TGTATTCATGAT-TGCTTTCTTCTCTAGATCTT---TGATGTCTATGTT 138475 | | |||| ||| | || | | || ||||| | ||| | |||| || || Sbjct 26647 GGCTGCCAAATTGTCCTTGTGCTCTTCTGCCTTCTGACGCACTTCGCTAATGTTGATATT 26588 Query 138476 GCCATCATCATCACACTTGACACCT---ACAACTTTCATTCCTGCCATGACTGCACTAGC 138532 || | || || ||| || || |||| |||||||| ||||||| || || Sbjct 26587 TCCCTTCTCGTC-GACT--CCAACTGGCACAATCTTCATTCCAGCCATGATGGCGGAGGC 26531 Query 138533 AGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGA 138592 ||||| |||||||| || || |||| || | || | || ||| | || |||||| Sbjct 26530 TGGATTGGTTCCATGAGCAGATACTGGAATGATGCAGATATCTCTGTGATGGTCTCCTCT 26471 Query 138593 TCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTT 138652 ||||||||||| ||| | | || || || || || || || ||| ||| Sbjct 26470 GGACTGATGATATGCCCTGATAGACATGAGGCCAGCGTATTCTCCAGCTGCTCCACTGTT 26411 Query 138653 AGGTTGTAATGATATAGAATCAAAACCTGTGAT--ATCACATAACCATTTCTGTAAGTCA 138710 || || | || | || ||| || || ||||| || | ||| | ||||| Sbjct 26410 TGGCTGGAGAGACACAGCATCGAATCCGGTGATGGATGCC--AACTGGGTAGCCAAGTCC 26353 Query 138711 TCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATG--TGGATGCACGTTGG 138768 || | || | ||||| ||| | | || ||| | | ||| | |||||| | ||| | Sbjct 26352 TCGAACATTTCCTGATATCCCTTTG-CTTGATCCAATG-GTACGAATGGATGGATGTTTG 26295 Query 138769 CAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAAC 138828 | || ||| ||| | || || |||| || | | |||||| | ||||||||||| Sbjct 26294 CCAACTCTGGCCACGTGACTGGAATCATCTCAGAGGTTGCATTCAACTTCATTGTGCAGG 26235 Query 138829 TACCAAGTGGAACCATA 138845 ||||| |||| |||| Sbjct 26234 ATCCAAGAGGAATCATA 26218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992031017600