Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq880 764 0.0 seq814 176 6e-39 seq140 113 6e-20 seq152 87.8 2e-12 >seq880 Length=74269 Score = 764 bits (846), Expect = 0.0 Identities = 761/986 (77%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 26732 CAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGAC 26791 |||| | ||| | |||||| || || || || ||||| || || || || | || | Sbjct 60340 CAGCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGT 60399 Query 26792 CAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAG 26851 ||||||||| | || || ||||||||||||| |||||||| |||||||| | || | Sbjct 60400 TAGCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTG 60459 Query 26852 ACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGA 26911 | || |||||||||||||| || | || || ||||| || || | ||| | || |||| Sbjct 60460 ATTGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGA 60519 Query 26912 ACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGA 26971 |||| || ||||| || ||||| ||||| | ||||||||| || ||||| |||||||| | Sbjct 60520 ACCAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAA 60579 Query 26972 ATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGG 27031 ||||||| ||||||||||| |||||||| ||||| ||||| || || ||||||||||| | Sbjct 60580 ATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAG 60639 Query 27032 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCAC 27091 | |||||||||||||| || || ||||| | ||| ||| || ||||||| || |||| Sbjct 60640 TTTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCAC 60699 Query 27092 GGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATA 27151 ||| | |||||| || || || ||||||||||| ||||| | || ||||| |||| Sbjct 60700 GGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATA 60759 Query 27152 CCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATA 27211 | ||||||||||| | ||| ||||| |||||||| | ||| ||||| || || ||||||| Sbjct 60760 CACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATA 60819 Query 27212 CAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTT 27271 |||||||| |||| || ||||| |||||||| | |||||| |||| ||||||||||||| Sbjct 60820 CAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTT 60879 Query 27272 GACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTA 27331 |||||| || || | || |||||| || | || ||||| ||||| || || || || | Sbjct 60880 GACCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAA 60939 Query 27332 CACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAG 27391 || |||||||||||||||||||||||| | || | |||||||||||| ||||| |||| Sbjct 60940 CAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAG 60999 Query 27392 CATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACC 27451 | | | || | | ||| || | || || | |||| ||||||||||||| || |||| Sbjct 61000 AACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACC 61059 Query 27452 ACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAAC 27511 ||||||| | || || |||||||||||||||||||| || | ||| || || |||||| Sbjct 61060 ACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAG 61119 Query 27512 TTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTT 27571 |||| ||||| ||||| || ||||||||||| || || | | |||||||| ||| || | Sbjct 61120 TTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCT 61179 Query 27572 CACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAG 27631 |||| ||||| || ||||| || || || || ||||| ||||||| ||||| || Sbjct 61180 CACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAG 61239 Query 27632 TTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGT 27691 |||| | ||| || || |||||||| | |||||| |||||||| | || |||||||| | Sbjct 61240 TTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTT 61299 Query 27692 TAGTTGATGTCACCCACTCACAGAAA 27717 ||| || ||||||||||| ||| Sbjct 61300 CAGTGCTAGTTACCCACTCACAAAAA 61325 Score = 432 bits (478), Expect = 5e-116 Identities = 651/919 (71%), Gaps = 5/919 (1%) Strand=Plus/Minus Query 23488 AAAT-ATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGA 23546 |||| |||||| || ||||| || || | | |||||| ||||||||||| |||||| Sbjct 50419 AAATGATTTTTTGTATAGAAAGTTTCGAATTCAGGATCTTCCGCAGCACGAATTTCTTGA 50360 Query 23547 CTCACAAAATCATAAGCACG-AAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGAC 23605 ||||||||||| ||||| ||| |||| ||| | || | | |||||| | | | Sbjct 50359 GATACAAAATCATATGCACGTAAGTTTAA-AGCTAAACCTACTACGCCAATTGCACTCAT 50301 Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 50300 CCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTTGAAAA 50241 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 || || || || ||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 50240 TGCTACACCAAAAATTTGTGACCAGAAACGATTCGCAGTTACCATTGAATATGTTTCTTC 50181 Query 23726 CTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGT 23785 | ||||| | | || || || || ||||| || ||||||||| | | ||| Sbjct 50180 AGCTTGAGTTGGGTTAAATGCACGGAATGTATTTGCACCATCACCATCTTCAAATAATGT 50121 Query 23786 ATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAAC 23845 || || ||||| | ||||| |||||| | || | ||| | || | | |||||| || Sbjct 50120 GTTTTCTACAGTTGCACCATGGATAGCACATAGTAACGCTGCACCTAAAACACCAGCTAC 50061 Query 23846 TCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAA 23905 |||||||||||||| ||||| | ||||||||||| || || |||| ||| || | || Sbjct 50060 ACCCATCATATGGAATGGGTTTAAAGTCCAGTTATGGAAACCTTGGAAGAATAGGATAAA 50001 Query 23906 CCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGG 23965 | ||| || || |||||||| ||||| || ||||||||||| || || || ||||| Sbjct 50000 TCGGAAGATTGCGGCAACACCAAAACTTGGTGCAAAGAACCAGCCAGATTGACCTAAAGG 49941 Query 23966 ATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTA 24025 |||||| | ||| || || ||||| || ||||| || | || ||||| || || || || Sbjct 49940 ATAGATTAAGAAAACTGATACGAAAACTGCAATTGGTGCTGAGAAAGCGATTGCGTTATA 49881 Query 24026 GGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGC 24085 ||||| ||| | | |||||| | ||||| ||||||||||||||||| || | || Sbjct 49880 TGGACGAATTTTTACTGAACGTGCAATCTCAAATTGACGTAACATAAAACCAATTAAAGC 49821 Query 24086 AAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAA 24145 ||| | ||| || | |||||||| | ||| | || || | ||| ||| || ||| Sbjct 49820 AAATGAACCATGTAATGCAACAAAAGTCCATAAACCACCTAATTGACACCAACGAGTAAA 49761 Query 24146 GTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGG 24205 ||| ||||| | || || ||||| | || | | |||||||||||| | ||||| Sbjct 49760 GTCGCCTTGTGCTTCTGGGCCCCATAATAATAATAATGAATGACCCATACTATTTGCAGG 49701 Query 24206 CGTCGAGACAGCTGCCGT-AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCAT 24264 || || || || || || |||||| ||| ||| || | | | ||| ||| | |||| Sbjct 49700 TGTAGAAACTGCAGCTGTTAAGAAA-TTACAACCTTCTAAAAATGAAGAAGCTAAACCAT 49642 Query 24265 GGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAG 24324 | || ||||| |||||||| | | ||||| | ||| || || | || | ||||| Sbjct 49641 GTGTATACCATGATGTAACAAATGTAATTCCAGTTAACCAGCCACCTAATGCTAAATAAG 49582 Query 24325 CAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCC 24384 || || | | || | ||||||||||| ||||| || || ||||| || || || Sbjct 49581 CACAAGGTAATAATAATAAACCAGACCAACCTACAAATACGAAACGATCACGACGAAGCC 49522 Query 24385 AGTCGTCCAAGATGTCAAA 24403 |||| || | ||||| || Sbjct 49521 AGTCATCAACAATGTCGAA 49503 >seq814 Length=161544 Score = 176 bits (194), Expect = 6e-39 Identities = 379/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 47761 ACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCT 47820 ||||| | ||| ||| | || | ||| || ||||| ||| |||| | ||||| || Sbjct 132225 ACAAATTCACGAACACTGTGCTGCTCTCCAGTTGCAATCACATAATCCTTTGGTTCATCC 132284 Query 47821 TGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGT 47880 || || ||||| | |||| |||||| ||||| | ||||| ||||| || | Sbjct 132285 TGCTGGAGCATCAGCCACTGCATCTCGACGTAATCCTTCGCATGCCCCCAATCTCTCTTC 132344 Query 47881 GCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCT 47940 ||||| |||||||| | || | || | | ||| | ||| | | || Sbjct 132345 GCATCGAGATTTCCCAAGTACAGTGCATCATCCAAACCAGCCTTGATCCTTGCCAGACCT 132404 Query 47941 CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGA 48000 | ||| ||||| | || ||||| || ||||| | || || || || || || || Sbjct 132405 CGTGTGATCTTCCTTGTCACAAATGTCTCACCTCTCAGAGGGGACTCGTGGTTGAACAGG 132464 Query 48001 ATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCA 48060 |||||| | |||||| |||| ||||| || || | |||||| ||||||||||| Sbjct 132465 ATACCATTGCAGGCAAACATACCGTACGACTCTCTATAGTTGACGGTGATCCAGTACCCG 132524 Query 48061 TAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGA 48120 | || ||||| | |||| || |||||||||||||||||||||||| | | || ||| Sbjct 132525 AACAGCTTTGCTGCCGCATATGGCGAACGTGGATAGAAAGGTGTGGTCACCTTTTGGGGA 132584 Query 48121 GTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCT 48180 |||| |||||||| ||| | || ||| |||||| || ||||| | || | || ||| Sbjct 132585 ATCTCCTGCACCTTTCCAAACAGCTCAGAGGTGGAAGCCTGATA-AAACTTGCACT-TCT 132642 Query 48181 --TCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCT 48238 ||||| | | | | || ||||| | |||||||| || | ||||| | Sbjct 132643 TCTCCATACCCAAAATTCTGATGGCCTCCAACACTCTCAACACCCCAAGAGCATCGACAT 132702 Query 48239 GACCAGTATACTC-GGGCATCTCAAACGAAACCTTTACATGACTCTGTGC-CCCAAGATT 48296 | |||||||||| ||||| || || || ||| ||||||||||| || |||||| || Sbjct 132703 CAGCAGTATACTCTGGGCA-CTGGAAGGACACCCCCACATGACTCTGGGCACCCAAG-TT 132760 Query 48297 ATAAATCTCATCTGGTTG 48314 |||||||| ||||| || Sbjct 132761 GTAAATCTCGTCTGGCTG 132778 >seq140 Length=195646 Score = 113 bits (124), Expect = 6e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 47016 AAATTATCATTTGGACCATATAGGTTTGTAGGCATCAAAGAGATAGCATTAAATCCATAC 47075 |||||||||||||| || || | || |||||| | | || |||||||| ||||| Sbjct 125110 AAATTATCATTTGGTCCGTACAAATTCGTAGGCTGGGCACAAATTGCATTAAAGCCATAT 125051 Query 47076 TGCTGATGGTATGCCTGACACATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCA 47135 | || | || ||||| || | |||||| || |||||||||||||| || || | ||| Sbjct 125050 TCCTTTTTATACGCCTGGCAAAGCTTGATGCCCGCAATCTTTGCAATGGCGTAGGCCTCA 124991 Query 47136 TTACTAGGTTCAAGAGGACCACTCATTAG---ATATTCTTCCCTAATAGGTTGTTCACAT 47192 || | || || || |||||||||| || | ||||| | || || || ||||| Sbjct 124990 TTTGTTGGCTCCAGGGGACCACTCAAAAGTGCACTTTCTT---TGATCGGCTGCTCACAG 124934 Query 47193 AATTTTGGATAAATGCAGGAAGAACCAAGAAATA-AAAGTTTCTTAACACCAA 47244 ||||| || || || || | ||||| ||||||| || |||| |||| |||| Sbjct 124933 AATTTGGGGTAGATACACGTCGAACCCAGAAATAGCAACTTTC-TAACCCCAA 124882 >seq152 Length=72664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 32648 TCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCC 32707 || || ||||| || ||||| || ||||||||||| || | | || || || |||||| Sbjct 25098 TCGGAGGTTGGGTAGGCAACGCAGGTGAGCACAAATCCATTGGCCATCTGGTCGTCATCC 25039 Query 32708 AAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAA 32767 ||||| ||||| || ||||| || || |||| | ||| ||||| || || || Sbjct 25038 AAGAAAGACTGGTCGGACTGGTCAACAGTTCCAGCCTGGACCTTTCCTGCGCAGGAAGAG 24979 Query 32768 CAGGCACCTGCACGACAAGAGTA 32790 ||||| || ||||| |||||||| Sbjct 24978 CAGGCTCCAGCACGGCAAGAGTA 24956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665487079561600