Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq232 122 1e-22 seq600 109 7e-19 seq556 107 2e-18 seq372 89.7 6e-13 >seq232 Length=44964 Score = 122 bits (134), Expect = 1e-22 Identities = 201/287 (70%), Gaps = 11/287 (4%) Strand=Plus/Plus Query 64946 TGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAA 65005 || |||| | |||||| |||||| ||||||||| || | || | |||||| | | Sbjct 11480 TGCTTGAGACATACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATCGAGA 11539 Query 65006 CTGTACCATGTATTGA-GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 | |||||| || ||| ||||||||| | ||||| |||| |||| |||| ||| Sbjct 11540 CAGTACCA-GTGGTGAAGAAGAAGGCAGATTGGGCCATGAGATGGATTGA------GTCC 11592 Query 65065 CGC---TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121 || || ||||| ||||| | |||| || || || || || || || ||||||||| Sbjct 11593 AGCGATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCC 11652 Query 65122 GGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTC 65181 || || ||||| || ||||| ||| | || ||||| || || | ||||| | ||| Sbjct 11653 GGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTC 11712 Query 65182 TCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || | || || || |||||||| |||||| || ||||| Sbjct 11713 TCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCACACAGATTTTGC 11759 >seq600 Length=304360 Score = 109 bits (120), Expect = 7e-19 Identities = 249/371 (67%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || ||||| || || ||| || || || || || || || |||||| Sbjct 66905 CCAGGTACTGGTAAGACTCTTCTGGCCAAGGCTATTGCAGGAGAGGCAGGAGTGCCATTC 66846 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || | | | || || || |||||||| ||||| ||||| | || Sbjct 66845 TTCTCAATT-TCAGGATCCGAATTCGTCGAAATGTTTGTCGGTGTTGGTGCATCCCGTGT 66787 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||||| || ||| ||| || ||| || || || ||||| || |||||||| Sbjct 66786 GAGGGATCTTTTCAAAAAGGCCAAGGAGAATGCCCCTTGCATAGTCTTTATCGATGAGAT 66727 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| || || | || | | |||| | || ||| ||||| ||||| || Sbjct 66726 TGATGCTGTTGGTAGATCTCGTGGTACAGGTGTTGGTGGAGGAAACGACGAAAGAGAGCA 66667 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 |||| | || || || | || ||||||||||| ||||| | | ||||| ||| | || Sbjct 66666 AACATTGAACCAGCTCTTGACAGAGATGGATGGATTTGAAGGTAATACTGGTATTATCGT 66607 Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673 |||| ||||| || | | |||||| | ||| | ||||| || ||||| || | || Sbjct 66606 GGTTGCAGCCACGAACAGAGCTGATATCTTGGATAATGCCCTTCTCCGCCCAGGAAGATT 66547 Query 175674 TGATCG-CAAG 175683 ||| || |||| Sbjct 66546 TGACCGTCAAG 66536 >seq556 Length=75407 Score = 107 bits (118), Expect = 2e-18 Identities = 247/368 (67%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGT--A 13610 ||||| || || |||||||| || || | ||||| || | || | ||||| || | Sbjct 29555 GGTATCCCAAAATTGGATGATGCAAATGATGCGGGA--GGAAGAAATTCGAAAGAGTGCA 29612 Query 13611 CTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCG 13670 | ||||| | |||||||| ||||| || || | | || | ||| | || || | Sbjct 29613 CACTCATCCTGACAGAGGGAGATTCTGCAAAGTCATTGGCCATCAGTGGTTTGTCAGTTG 29672 Query 13671 TTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACG 13730 |||| | |||| ||||| || ||||||||||| || |||| ||||||||| || | Sbjct 29673 TTGGAAGAGATCGATACGGAGTCTTCCCACTTCGAGGAAAATTGCTGAATGTTCGAGATG 29732 Query 13731 CTTCGGTGGCA--CAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGG 13788 | | ||| | || |||| ||| || ||||| || ||||| |||| | || Sbjct 29733 C--CAGTGCTAGTCAAATCACTGGCAACGCAGAAATCAACAATATCAAGCAGATTTTGGG 29790 Query 13789 TCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGAT 13848 || || || ||||| | ||| | ||||| || || ||||| | | ||||| Sbjct 29791 GCTCCAGCATGGAAAGGTCTATGAGGATGTCAAGTCCCTGCGATATGGGCACTTGATGAT 29850 Query 13849 TATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCA 13908 ||||| ||| ||| | ||||| |||||||| ||||| || ||| | ||| | | || Sbjct 29851 CATGACGGATCAGGATCACGATGGATCTCACATTAAGGGACTTATCATGAATTTCTTGCA 29910 Query 13909 CTACTTCT 13916 | |||||| Sbjct 29911 CCACTTCT 29918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 14330 GCAGACTTGAAGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAA 14389 || ||| || ||||||| || | | || ||| || || || ||| ||||||||| Sbjct 30326 GCTGACCTGGAGCGCTCGATCCCAAACATCATGGACGGGCTGAAACCTGGACAGAGGAAG 30385 Query 14390 GTGATGTATGCTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCG 14449 | ||||||||||| ||| | | ||||||||| || || |||||||||||| |||| Sbjct 30386 ATCATGTATGCTTGTTTCAAAAGAAATCTCAAGTCGGATATCAAGGTGGCACAATTGGCT 30445 Query 14450 GCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGA-AGTATCCTTAGCGGACACGAT 14508 | |||||||| || | ||||| || || ||||| || | |||| || || || Sbjct 30446 GGGTATGTCGCCGAGCATTCTGCATATCATCATGGCGAGAACTCCCTTTGC-TCTACCAT 30504 Query 14509 TGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGG 14568 ||| |||| | ||| || ||||||||||| ||| ||||| || || Sbjct 30505 TGTCGGCCTGGCTCAGAACTTTGTTGGGTCAAACAACATCAACACTCTTGTTCCACAAGG 30564 Query 14569 TCAATTTGGTACGCGTCT 14586 ||| |||||||| ||||| Sbjct 30565 TCAGTTTGGTACTCGTCT 30582 >seq372 Length=29805 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/264 (68%), Gaps = 15/264 (6%) Strand=Plus/Minus Query 5960 AATCTTATAGCCATATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGAGAGAAT 6019 |||||| || |||||||| | ||||| || || |||||| |||||| | | || Sbjct 17357 AATCTTGTATCCATATGTGCCAAGACCAACGACGATTCCAATTCCTCCGATGACAAACAT 17298 Query 6020 CCAATATGCGTCGTTACCCATTTCAGCATTCTTGGAGACCGTAC---CGGATTTATAGAT 6076 |||| || | ||| | || ||||||| | | || || ||| |||| Sbjct 17297 CCAAATTGGG-----ACCTGT----GC---CTTGGAGTCAGCACATTCGCATTGCCAGAT 17250 Query 6077 GGCGTAAATGGCGGCAAATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGTGCGAA 6136 || ||||| || ||||||| ||||| || || || ||||| ||||||||||| || || Sbjct 17249 TGCATAAATTGCAGCAAATGAACCGATGGAGTTTGCCACATCGTTGGCACCGTGAGCAAA 17190 Query 6137 CGAATCACAACATGCCGTTAAGATCTGAAGGTACCTCATAGAGTGTTCGGTCTTTGTGTC 6196 | || | ||| || || | || ||| |||||| | | |||| |||||||| ||| Sbjct 17189 GGCATTAGCACAGGCAGTAATGACCTGGAGGTACTTGAAAGAGAACTCGGTCTTCACGTC 17130 Query 6197 AAATACCTCCGCATTGTCGTGGAT 6220 ||| |||| ||| ||||| || Sbjct 17129 AAAGACCTGGGCACCCTCGTGAAT 17106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563037734400