Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq880 668 0.0 >seq880 Length=74269 Score = 668 bits (740), Expect = 0.0 Identities = 738/983 (75%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| || | ||| |||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || || | ||| | ||| ||||||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| ||||| || || || | |||||||||||| || ||||||| | || ||| ||| Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| || || ||||| | | ||| | ||||||||| | | | ||||||||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 || || || ||||||||||| | ||||||||| ||||||||||| || || || || || Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||||||||||||||| || ||||| | ||| || || | |||||| || || | | Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGG 60701 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 |||| ||||| || || | |||||||||||||| ||| | ||| ||||| || | | Sbjct 60702 ATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 60761 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || || || ||| ||||||||| || ||||| | ||||| ||||| ||||||||||| Sbjct 60762 CCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 60821 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||||||||| || ||||| || ||||||| ||||| ||||||||||| ||||| ||| Sbjct 60822 AGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGA 60881 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 || | ||| || | | ||| || || ||| |||| ||||| || || || ||| Sbjct 60882 CCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACA 60941 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||||||| | ||||||||| ||| | ||||| ||||||| | ||||||||||| | Sbjct 60942 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAA 61001 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | || | | ||| || | | ||| || || || ||||| ||||| || |||||| Sbjct 61002 CATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCAC 61061 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 |||||||| | ||||||||||| || || ||||| ||||| ||||| ||||| |||| | Sbjct 61062 TCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTT 61121 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 ||||| || ||||| |||||||||||||| || || | |||||||| | |||||| ||| Sbjct 61122 GGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCA 61181 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 || ||||| |||||||| || || |||||||| |||||||| | ||| || |||| Sbjct 61182 CGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTT 61241 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 |||| ||| | ||| ||||||| || ||||||||||||| || | | ||| | Sbjct 61242 GCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCA 61301 Query 8851 GTACTTGTAACCCACTCGCAAAA 8873 || || || |||||||| ||||| Sbjct 61302 GTGCTAGTTACCCACTCACAAAA 61324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615855625513600