Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq880 758 0.0 >seq880 Length=74269 Score = 758 bits (840), Expect = 0.0 Identities = 759/985 (77%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 || || || ||||| || ||||| | |||||| | || |||||||||||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 165888 ||||| || ||||| || | ||||||| |||||| |||| || ||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 165889 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAAC 165948 || || || ||||| || |||||||| || || ||||||| | | || ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 165949 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATC 166008 |||||||| ||||| |||||||| |||| ||||| |||||| |||| ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 166009 TGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTC 166068 |||||||| || || | || || ||| | || ||||||||||||| |||| | ||||| Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 166069 TTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGT 166128 | || ||| | | || | | | | ||||||||||||||||||||| | |||| |||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 166129 CTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCA 166188 |||||||||||||||||||| ||||||||||||||||||||| ||||| || | || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 166189 GTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATC 166248 |||||| | | || || ||||||||||| ||||||||||| |||||| | || ||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 166249 TCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCC 166308 ||||| |||||||||| |||| | || ||||||||||||||||| || | ||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 166309 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 166368 ||||||||| | || |||||||| ||||||||||| || || ||||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 166369 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 166428 | || |||||||| | | | || || ||||||| |||||| ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 166429 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 166488 ||||| || || |||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 166489 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 166548 ||||| |||||||||||||||||||| |||||||| || || || ||||||||| | ||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 166549 GCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAAC 166608 || ||||| || || || || |||||||| || | || | || || |||||||| ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 166609 CTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 166668 | || ||||||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 166669 TGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCA 166728 ||||| ||| || ||||||| ||| | ||||| ||||| |||||||| | || || Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 166729 CACAACTTCCCCCTCGACCTCGCTG 166753 |||||||| || || || | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 480 bits (532), Expect = 9e-131 Identities = 724/1013 (71%), Gaps = 16/1013 (2%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 167085 |||||||||||| | |||||||| || ||||| || |||||||| || || || || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT-TTATTATTATT 49573 Query 167086 CCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 167144 || ||||||| | || | || || ||| | ||||| | ||| || || || || Sbjct 49574 ACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATG 49633 Query 167145 GTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTTCTTA-CTGCGGCAG 167203 |||||| ||||| | || || | | | || ||| || ||||||| | || |||| Sbjct 49634 GTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAG 49692 Query 167204 TTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTC 167263 || ||| || ||| || |||||||||||| ||| | | ||||||| || ||| | | Sbjct 49693 TTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCAC 49752 Query 167264 AAGGGGA-TTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 |||| || ||| || | ||| ||| | || || | ||| ||||||| || | || Sbjct 49753 AAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACAT 49811 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGT 167382 || | |||||| | |||||||| ||| | || || ||||| |||| || | Sbjct 49812 GGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAA 49871 Query 167383 ATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTC 167442 || ||||| || || || || |||||||| | || ||||| || ||||| |||||| Sbjct 49872 ATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTC 49931 Query 167443 CTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCC 167502 | ||||||| | |||||| ||||||||||||| || || || || ||||| Sbjct 49932 TTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCA 49991 Query 167503 ATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCAT 167562 ||||||||||| |||| ||| ||||||| ||||| |||||||| | || ||||| ||| Sbjct 49992 ATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCAT 50051 Query 167563 ATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACA 167622 |||||||||||||| ||| | | |||| || || || | ||| |||||||||| || Sbjct 50052 ATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACT 50111 Query 167623 GTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCT 167682 ||||| || || || | |||||||||||| ||||| || || ||||| | | Sbjct 50112 GTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCA 50171 Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| || ||||||||||| || || || || |||||||| || || || Sbjct 50172 ACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTT 50231 Query 167743 GGCATTGC--TTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTA 167800 || | || ||||| || ||||| ||| | ||||||||||||||||| || || || | Sbjct 50232 GGTGTAGCATTTTCA--AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 50289 Query 167801 TGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTAC 167859 || | |||| | |||||| | | ||| | ||| |||| ||| ||||| || Sbjct 50290 CTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGCATAT 50348 Query 167860 GATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACT 167919 ||||| || |||||||| || | || ||||| ||||| || || |||||||||||||| Sbjct 50349 GATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACA 50408 Query 167920 AAAAA-CATCCTTCTGA-ATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTC 167977 ||||| ||| || | | |||||||| ||||||| ||| | || || ||||| |||| Sbjct 50409 AAAAATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTC 50466 Query 167978 ATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 |||| || || || ||||||||||| || | ||||| || ||||| || ||| Sbjct 50467 ATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAA 50519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||||| |||||||| || ||||| |||| ||||||| ||||||||||||||||||| || Sbjct 68549 TCCTCAATAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 68608 Query 18189 CTACCTGGGGAG 18200 |||| ||||||| Sbjct 68609 CTACTTGGGGAG 68620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561241826272000