Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq880 596 4e-166 >seq880 Length=74269 Score = 596 bits (660), Expect = 4e-166 Identities = 729/991 (74%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||||| ||| ||| | |||||| | || | || |||||| Sbjct 61333 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 61274 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATT 42399 ||||| | ||||| || ||| | |||| || || || || |||| || || Sbjct 61273 GGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATC 61214 Query 42400 GCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTAT 42459 ||||| ||||| || || || ||||| || ||||| ||||| ||||| || | | || Sbjct 61213 GCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATAC 61154 Query 42460 GGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTG 42519 || |||||||||||||| ||||| || || || | ||||| ||||| ||||||| Sbjct 61153 GGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTC 61094 Query 42520 TATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579 || | ||||||||||| | | | || || ||| | ||||| || || ||||| || Sbjct 61093 TACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAA 61034 Query 42580 CTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTT 42639 | || || | || ||| | | ||| | | |||||| |||| || || |||||| | Sbjct 61033 TTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTA 60974 Query 42640 TCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCA 42699 || | ||| | || ||| | || |||||| |||||||||||| || || || |||||| Sbjct 60973 TCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCA 60914 Query 42700 GCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCT 42759 || || || || ||| | | || ||| | || ||||||||||| || ||||| ||||| Sbjct 60913 GCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCA 60854 Query 42760 CTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTT 42819 | || || || ||||| |||||||||||| | || ||||| ||||| || ||||| | Sbjct 60853 TTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTA 60794 Query 42820 ATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCT 42879 ||||| || ||||||||| | |||||||| || ||||||||||| || || ||||||||| Sbjct 60793 ATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 60734 Query 42880 ATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCC 42937 ||||| ||| ||||| || ||||| | | |||||||| |||||||||||| ||| Sbjct 60733 ATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCT 60674 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || | || ||||| || |||||||| || || ||||| ||||| || || || |||| Sbjct 60673 AACG--AAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATG 60616 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 |||||||||| || | ||||||||||| || || ||||| || ||| || || |||| Sbjct 60615 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACT 60556 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||||||| || | || | |||| Sbjct 60555 TCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTA 60496 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCA 43175 |||| |||||||| |||||||| ||||| ||||||||| |||| ||| ||| || || Sbjct 60495 TGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--TCACAAGGTCG 60438 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| ||| ||||||||||||||| | || ||||| ||| | || |||| || ||||| Sbjct 60437 TGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCA 60378 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 || | ||||| || ||||| || |||||| Sbjct 60377 TGAAAGAAATGCTCACAACTTTCCACTTGAT 60347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531300082240