Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq880 500 3e-137 >seq880 Length=74269 Score = 500 bits (554), Expect = 3e-137 Identities = 703/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| |||||||||||||| |||||||| | || ||||| ||||||| || | |||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | |||||| ||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| ||||| |||||||||| |||||||||||| || | ||||| | || || | | Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || ||||| || ||||||| ||| | ||||| || | ||||| ||| ||||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || || || || ||||| | |||||||| || || ||||| || || || || || Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| || || || | || ||| | | || || ||||| Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGG 60701 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||| ||||| || | ||||||||||| | ||| | | ||||| || || Sbjct 60702 ATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 60761 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||||||||| |||||||||||||||||| | || || || || ||||||||||| Sbjct 60762 CCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 60821 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| || ||||| |||||||| | ||||| |||||| ||| ||||| Sbjct 60822 AGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGA 60881 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || |||| | ||| || || |||||| | | |||||||| || |||||| Sbjct 60882 CCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACA 60941 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 |||||||| | ||| |||| | | |||||| |||||||| | || || | Sbjct 60942 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAA 61001 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||| |||| ||||| || | | || | ||| || || || || ||||||| |||| Sbjct 61002 CATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCAC 61061 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||||| ||||| ||||||| || || ||||| || | Sbjct 61062 TCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTT 61121 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || || || || ||||| || || ||||| ||||| | ||| || || ||||| |||||| Sbjct 61122 GGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCA 61181 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776 || || ||||| ||||| || || || || ||||| || || | || || |||||| Sbjct 61182 CGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTT 61241 Query 26777 GCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | || || |||| ||||| | || || ||||| || | || | |||||| || Sbjct 61242 GCAGTTAATAGAGTAGGG-ATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTC 61300 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 ||| || || |||||||||||||| Sbjct 61301 AGTGCTAGTTACCCACTCACAAAA 61324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710456409600