Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq880 682 0.0 >seq880 Length=74269 Score = 682 bits (756), Expect = 0.0 Identities = 738/978 (75%), Gaps = 0/978 (0%) Strand=Plus/Minus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||||||||| |||| ||||| | || |||||||||| ||||| | ||||||| Sbjct 61317 AGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTAATGATCC 61258 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 || || | |||| ||||| ||||| |||| || || ||||| ||||| || | Sbjct 61257 CTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCTCCAGTTG 61198 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 | || |||||||| ||||| || || ||||||| ||| | || |||||||||||||||| Sbjct 61197 ATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAACATCATCT 61138 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 | ||||| ||||| || | ||||||||| |||||| | || ||||| || || ||||||| Sbjct 61137 CAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATCTGGGAAG 61078 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 | || || | ||||||||||| ||||| |||||||||| |||| | || || | || | Sbjct 61077 CTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGTCATT 61018 Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335 || | | || | | ||| |||||| |||||||| | |||| |||| | || | Sbjct 61017 TCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGTTTAGGTA 60958 Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395 ||||||| |||||| |||||| ||||| |||||||| |||| || ||||||||| Sbjct 60957 TGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCTGTATTCA 60898 Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455 | |||| || |||||||||||||||||||||||| ||||| | |||||||| |||| Sbjct 60897 TCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATCTCAGGTA 60838 Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACA 155515 | || |||| ||| | || |||||||| || ||||| ||| | |||||||| ||||| | Sbjct 60837 CATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCATTCCATA 60778 Query 155516 TGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGG 155575 || | || || || ||||| || ||||| || | ||||| ||||||||||||||| | | Sbjct 60777 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCACTTG 60718 Query 155576 TGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGT 155635 | || |||||| ||||||||||||||||||| | || || ||| | |||||||| | Sbjct 60717 TAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGTTACAAAT 60658 Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 | || ||||||||||||||||| ||||| || ||||||||||| ||||| |||||| | | Sbjct 60657 TTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAA 60598 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 ||||||| || || || || |||||||| | | ||||||||| | ||||| |||| Sbjct 60597 TCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGC 60538 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || || | || ||| |||||| | ||| | ||||| |||||||| ||| | || | Sbjct 60537 CAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATG 60478 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAG 155875 |||||||||||||||| || || ||||| | ||| || ||| || ||||| | Sbjct 60477 GTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGCTG 60418 Query 155876 ACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 155935 | ||| ||||||| ||| | ||||| ||||||||||| || | || |||||||||| Sbjct 60417 ATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCTCACAACT 60358 Query 155936 TCCCTCTTGACCTTGCTG 155953 | || ||||| | |||| Sbjct 60357 TTCCACTTGATTTAGCTG 60340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584828766812800