Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq880 654 0.0 >seq880 Length=74269 Score = 654 bits (724), Expect = 0.0 Identities = 713/944 (76%), Gaps = 2/944 (0%) Strand=Plus/Plus Query 67360 CAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AAGT 67418 |||| | ||||| || ||||||||||| || | || ||||| ||||| || || |||| Sbjct 60340 CAGCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGT 60399 Query 67419 CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACG 67478 || | ||||| || || |||||||| || || ||| || || || || Sbjct 60400 -TAGCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACT 60458 Query 67479 GATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTG 67538 |||||||||||||||||||| || | ||| |||||||||||||| | ||| | |||||| Sbjct 60459 GATTGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTG 60518 Query 67539 AACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTG 67598 ||||| || | || || || | ||||| | ||||||||| | | |||||||| Sbjct 60519 AACCAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTA 60578 Query 67599 AAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAA 67658 || || || || |||||||| || ||||| ||||| ||||||||||| || ||||||||| Sbjct 60579 AATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAA 60638 Query 67659 GTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCT 67718 || ||||||||||| || || |||||||| | ||| ||| || | ||||||||||| Sbjct 60639 GTTTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCA 60698 Query 67719 CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAAT 67778 | ||| | |||||||| ||||| |||||||||||||| || | ||||||||| ||| Sbjct 60699 CGGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 60758 Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838 ||||| || || || | |||||||||||||||||| | |||||||||||| |||||||| Sbjct 60759 ACACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAAT 60818 Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCT 67898 || | |||| |||| || ||||| || ||||| | ||||| | ||||||||||||||| Sbjct 60819 ACAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCT 60878 Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCT 67958 ||||||| || || | | ||| ||||| ||||||| ||||| || ||||| || Sbjct 60879 TGACCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCA 60938 Query 67959 ACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTAT 68018 ||| |||||| ||||||||||| | |||| |||| | |||||||| |||||| ||| Sbjct 60939 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAA 60998 Query 68019 GCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAAC 68078 | | || | | ||| || | || || | |||| |||| ||||| || || ||| Sbjct 60999 GAACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAAC 61058 Query 68079 CACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAA 68138 |||||||||| || || ||||||||||| || ||||| || | ||| || ||||||||| Sbjct 61059 CACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAA 61118 Query 68139 CTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGT 68198 | |||||||| ||||| || ||||||||||||||||| | | ||||| | |||||| Sbjct 61119 GTTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGC 61178 Query 68199 TCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTT 68258 || | |||||||||||||||||||||||| || || || ||||| |||||||| || Sbjct 61179 TCACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTA 61238 Query 68259 GCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 | ||| | | | ||| ||||| || ||||| |||||||| Sbjct 61239 GTTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACC 61282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566940963580800