Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq880 699 0.0 >seq880 Length=74269 Score = 699 bits (774), Expect = 0.0 Identities = 752/991 (76%), Gaps = 12/991 (1%) Strand=Plus/Plus Query 67841 CAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAAC 67900 |||| | || || || |||||||| || || | |||||||| ||||| ||||| || Sbjct 60340 CAGCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGT 60399 Query 67901 CAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACT-----ATCAAG 67955 ||| ||||| | || || ||||| || | || |||| || || ||| | Sbjct 60400 TAGCACGGTTAACAATATCAGCCCAAGT--GTTGA---TTACACGACCTTGTGAATCTAC 60454 Query 67956 GATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGC 68015 | || |||||||||||||||||||| | ||| |||||||| || || ||| | || Sbjct 60455 AACTGATTGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGC 60514 Query 68016 AGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTT 68075 ||||||||| |||||||| || ||||| ||||| | ||||||||| | ||||| ||||| Sbjct 60515 AGTGAACCAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTT 60574 Query 68076 GTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTT 68135 ||| || || || || |||||||| | |||||| ||||| ||||| ||||| || ||||| Sbjct 60575 GTTAAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTT 60634 Query 68136 GTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGT 68195 |||||| |||||||||||||| || |||||||| | ||| || || ||||||| || Sbjct 60635 GTAAGTTTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGT 60694 Query 68196 TTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACC 68255 |||||| | | ||||||||| || || ||||| ||||| || ||| | || ||||| Sbjct 60695 TTCACGGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACC 60754 Query 68256 AAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTG 68315 |||||| |||||||| || | ||||||||| |||||||| | |||||||||||| ||||| Sbjct 60755 AAATACACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTG 60814 Query 68316 GAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGA 68375 ||| || |||||| ||||||| ||||| || || || | ||||| | |||||||| || Sbjct 60815 GAATACAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGA 60874 Query 68376 ACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTA 68435 ||||||||||| || || | | ||| || || | ||||| ||||| ||||| ||||| Sbjct 60875 ACCTTGACCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTA 60934 Query 68436 TGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCAT 68495 |||||| |||||| ||||||||||| | ||| | || | |||||| ||||| ||||| Sbjct 60935 AGCAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCAT 60994 Query 68496 GTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTA 68555 ||| | | | | ||| | | ||| ||| | | || | |||| |||||||||| ||||| Sbjct 60995 GTAAGAACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTA 61054 Query 68556 CAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATT 68615 ||||||||||| | | || |||||||| || || || || || | |||||| || || Sbjct 61055 TAACCACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTT 61114 Query 68616 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAAC 68675 |||| | |||||||| ||||| || |||||||||||||| || | | |||||||| ||| Sbjct 61115 TGAAGTTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAAC 61174 Query 68676 AGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-AC 68734 ||| ||||| ||||||||||| || || || ||||||||||| || |||| |||||| || Sbjct 61175 AGGCTCACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATAC 61234 Query 68735 AGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGC 68794 | | ||||| | | || ||||||||||| | || || |||||||| | ||| | | Sbjct 61235 TG-TAGTTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAAC 61293 Query 68795 GGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||| || ||| ||| ||||| || || || Sbjct 61294 GGTTTTCAGTGCTAGTTACCCACTCACAAAA 61324 Score = 520 bits (576), Expect = 1e-142 Identities = 737/1031 (71%), Gaps = 4/1031 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | || || ||||||||||| || |||||||| || | Sbjct 50520 ATTAAAGAGCGTTTCCACGTGGTAATACCTCCTCTGGGAATACTAATTTTTCATGAGGCT 50461 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATG-TTCTTTGTGTAG 66704 |||| || |||| ||| || |||| |||||||| |||| |||| || ||||| ||| Sbjct 50460 GATCTTGAGCAGCCATCCAAGCTCGAACACCTTCATCTAATA-AATGATTTTTTGTATAG 50402 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || ||||| || || ||||| || || | || ||||| |||||||| ||||| ||| Sbjct 50401 AAAGTTTCGAATTCAGGATCTTCCGCAGCACGAATTTCTTGAGATACAAAATCATATGCA 50342 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 || | ||| | ||| | ||| | | || || | ||| |||| | ||| | || || Sbjct 50341 CGTAAGTTTAAAGCTAAACCTACTACGCCAATTGCACTCATCCATAAACCAGTTACTGGT 50282 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||||| ||||| | ||||| ||| || | |||||| || || Sbjct 50281 ACAAATAACATAAAGAAATGTAACCAACGTTTATTTGAAAATGCTACACCAAAAATTTGT 50222 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| || || ||||| |||||||| || |||||||| ||||||| | || ||| Sbjct 50221 GACCAGAAACGATTCGCAGTTACCATTGAATATGTTTCTTCAGCTTGAGTTGGGTTAAAT 50162 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| || ||||| |||||||||||| | | || || ||||| || ||||| Sbjct 50161 GCACGGAATGTATTTGCACCATCACCATCTTCAAATAATGTGTTTTCTACAGTTGCACCA 50102 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 || || ||| | || || || |||| | | ||| ||||||||||||||||| || ||| Sbjct 50101 TGGATAGCACATAGTAACGCTGCACCTAAAACACCAGCTACACCCATCATATGGAATGGG 50042 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || || |||||||||||||| ||||| | ||| || | ||||| |||||||| | || Sbjct 50041 TTTAAAGTCCAGTTATGGAAACCTTGGAAGAATAGGATAAATCGGAAGATTGCGGCAACA 49982 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||| || || ||||| | |||||||| | ||| ||||| | || || Sbjct 49981 CCAAAACTTGGTGCAAAGAACCAGCCAGATTGACCTAAAGGATAGATTAAGAAAACTGAT 49922 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAG 67243 || ||||| || || || | ||||| || || || || || ||||| || | ||| Sbjct 49921 ACGAAAACTGCAATTGGTGCTGAGAAAGCGATTGCGTTATATGGACGAATTTTTACTGA- 49863 Query 67244 ACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 |||||| | ||||| || || | ||| |||||||||| ||| || | || || | || Sbjct 49862 ACGTGCAATCTCAAATTGACGTAACATAAAACCAATTAAAGCAAATGAACCATGTAATGC 49803 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 |||||| |||| | || || | ||| ||| || || || || || | || || Sbjct 49802 AACAAAAGTCCATAAACCACCTAATTGACACCAACGAGTAAAGTCGCCTTGTGCTTCTGG 49743 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | || | | |||||||||||| || ||||| || || || || ||||| Sbjct 49742 GCCCCATAATAATAATAATGAATGACCCATACTATTTGCAGGTGTAGAAACTGCAGCTGT 49683 Query 67424 GAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | |||||| ||| || | | | ||| || | || || || ||||| ||| || Sbjct 49682 TAAGAAATTACAACCTTCTAAAAATGAAGAAGCTAAACCATGTGTATACCATGATGTAAC 49623 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 ||| ||| | ||||| | ||||||||| | ||| | ||||||| || || | | || Sbjct 49622 AAATGTAATTCCAGTTAACCAGCCACCTAATGCTAAATAAGCACAAGGTAATAATAATAA 49563 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAA 67603 ||||||||||| ||||| || || ||||| || |||||||||||||| | ||||| Sbjct 49562 ACCAGACCAACCTACAAATACGAAACGATCACGACGAAGCCAGTCATCAACAATGTCGAA 49503 Query 67604 CCACCCCCGTT 67614 | || |||| Sbjct 49502 TAAACCACGTT 49492 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||| ||||||||||||||||||| ||||||| |||| ||||| || ||| Sbjct 68620 CTCCCCAAGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATTGCTCTACCACTG 68561 Query 35571 AGCTACTGAGGATTGAG 35587 ||||| |||||||| || Sbjct 68560 AGCTATTGAGGATTTAG 68544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572048107401600