Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq457 172 2e-37 seq600 134 4e-26 seq249 114 4e-20 seq872 113 1e-19 seq3 105 2e-17 seq769 91.5 4e-13 seq429 91.5 4e-13 seq634 86.0 2e-11 >seq457 Length=513114 Score = 172 bits (190), Expect = 2e-37 Identities = 397/592 (67%), Gaps = 11/592 (2%) Strand=Plus/Plus Query 155946 TAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAAT 156005 ||||| | || |||||| | | || || | |||||||||||||| | || | | Sbjct 208851 TAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTCAAGCCAG 208910 Query 156006 TCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCA 156065 || |||||||| || ||||||| ||||| ||||| || || ||||| || Sbjct 208911 TCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTCTCTTCCCC 208970 Query 156066 CC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 || |||||| ||||| | || || | |||||| |||| |||||||| | ||||||| Sbjct 208971 CCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTACAATACCA 209030 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182 || ||||| ||||| ||||| ||||||| ||||||| | | | |||||| ||| Sbjct 209031 TTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTATGCATAGAC 209090 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 || || || || |||| | || || || ||| || ||||| | ||| | |||| Sbjct 209091 AGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGTCATAAATG 209150 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 ||||||||| ||||| | ||| | | | | |||||||| | ||||| ||||| Sbjct 209151 CCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAGGGCGTGGA 209210 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG 156362 || || || ||||| || || || | ||||| | || | | | ||||| | | Sbjct 209211 GTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACAGCAGGTGG 209270 Query 156363 TATGTCTCCTTAAT--CTTC-TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 |||||||| ||| || | |||| ||| | ||| || | | || || ||||| Sbjct 209271 TATGTCTC---AATGGCTGCATCAATATTCTCCTTGTGGATTCCAACTGAAACTCTCATG 209327 Query 156420 CACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGGTATGCGCGTTC 156478 ||| ||||| || | ||| || | ||| |||| | | || | |||| || || Sbjct 209328 AGCATGTGCTGTGGCCTCTCCACGA-CACGACCATTGACCCTGAGCAAATATGAACGCTC 209386 Query 156479 CAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAATC 156530 ||||||||| || || |||||||| | |||||||| | ||| ||||| Sbjct 209387 CAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACAATC 209438 >seq600 Length=304360 Score = 134 bits (148), Expect = 4e-26 Identities = 318/473 (67%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AA 288940 || || ||||| |||||||| || ||||| | || | |||| | | || ||| || Sbjct 66574 TCCAAGATATCAGCTCTGTTCGTGGCTGCAACCACGATAATACCAGTA--TTACCTTCAA 66631 Query 288941 ATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC 289000 |||||||||| ||| || | || || | |||||| || ||||| || ||| |||| Sbjct 66632 ATCCATCCATCTCTGTCAAGAGCTGGTTCAATGTTTGCTCTCTTTCGTCGTTT---CCTC 66688 Query 289001 TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 | |||| | | | | | | ||||||||||||||| || || || || | | Sbjct 66689 CACCAACACCTGTACCACGAGATCT---ACCAACAGCATCAATCTCATCGATAAAGACTA 66745 Query 289061 CACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || || | ||| | | || || || | || || ||||||||||| |||| || Sbjct 66746 TGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAGATCCCTCACACGGGATGCACCAACAC 66805 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| ||||||| || ||||| || | || | |||| | ||||| || ||| || Sbjct 66806 CGACAAACATTTCGACGAATTCGGATCCTGA-AATTGAGAAGAATGGCACTCCTGCCTCT 66864 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 ||||| | ||| | |||||||| |||||||| || || ||||| || | || || | Sbjct 66865 CCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAGTACCTGGTGGGCCAACCAAGAGGCAT 66924 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 |||||||| | ||| || ||| | | | | ||| || |||| || ||||| || Sbjct 66925 CCCTTTGGGATTTTGGCGCCAACGGCTGTGAAACGCTCTGGCTTCTTCAAGAATTCCACG 66984 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||||| | || | ||||| |||||| ||| || || || | ||||| Sbjct 66985 ATTTCCTGGAAATCCTGCTTTGCTTCATCAACTCCAGCGACGTCTCCGAAAGT 67037 >seq249 Length=40845 Score = 114 bits (126), Expect = 4e-20 Identities = 296/441 (67%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| ||||| || |||||| | | ||| | || |||||| ||| | ||| | | Sbjct 13299 ATTCCTTACAGTGCCATCATAGCGCACCATCAAATCCTCCATAGCCTTCACTAACCTCCT 13358 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || || || | || ||||| || ||||||||||| | ||| | | |||||| Sbjct 13359 TTGAATGTATCCTGTCGAAGCAGTTTTCACTGCTGTATCAATCAAACCTTCTCTACCACC 13418 Query 302658 CATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 |||||| |||||||| | ||||| | ||| |||| | | | |||| |||| || Sbjct 13419 CATAGCGTGGAAGAAAAACTCTTGAGGAGTC-AAGCCTCGC-AGGTAGGAATTCTCGACA 13476 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || || || || ||| | ||| ||| || || ||||| ||||| | | | Sbjct 13477 AACCCTCGACTTTCTGGCCCAAAGTCATCCTTTGTGAAATGTGGAAGGGTGCGCTGAGAA 13536 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || | || || | |||||| ||||| || ||||| |||| || | ||||||||| Sbjct 13537 AATCCAAACGGAATTCTCTTTCCTTCAACATTTTGCTGACCCACACAAGCAATCATCTGT 13596 Query 302836 GAAATATTTA-AATCACTGCCCTTGGAGCCAGCATTTACCATAATAACAAACCTGTTATT 302894 || || || | | | | || ||||| |||||| | ||||| |||| | |||| | Sbjct 13597 GAGATGTTGATGAACGAT-CCTTTGGACCCAGCAGTCACCATTCTAACTACATTGTTTGT 13655 Query 302895 CT-TGTCTAA-ATTGGTGCGTCCTAACTTACCAGCCTCAAAAGAAGCCTTGTTTAAGATA 302952 | | || || |||| |||| | || || ||||| ||| | ||| ||||| | | Sbjct 13656 ATCTCTCAAAGATTGCTGCGCCATA--TTTCCAGCATCATCACGAGCTTTGTTCAGAACT 13713 Query 302953 TTATTCACTTGTGTCTCAAAT 302973 | ||||||||| | |||||| Sbjct 13714 TGATTCACTTGATTTTCAAAT 13734 >seq872 Length=86813 Score = 113 bits (124), Expect = 1e-19 Identities = 333/506 (66%), Gaps = 22/506 (4%) Strand=Plus/Plus Query 288844 ACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTT 288903 || ||||||||||| ||||| | || | ||||| ||||| || | ||| ||||| Sbjct 5106 ACACTCCTATCAAATCTACCTGGCCGGATCAATGCAGGGTCCAACACATCCTTCCTGTTG 5165 Query 288904 GTTGCTGCCAATACAACAATA---GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA 288960 || ||||||| || |||| ||||| | | ||| |||||||| | || Sbjct 5166 GTGGCTGCCATCACGACAACCTGGGATTCTGAATC---AAAACCATCCATTTCAGACAAC 5222 Query 288961 ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTC 289020 |||||||| || || || || || || ||||| | ||| | |||||||| Sbjct 5223 ATTTGATTCAGCGTCTGATCTCTCTCGTCATT--ACCCTGTGCTCCGCCCCGAATC---- 5276 Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||| ||||||| ||||||||| || || || || | || | | ||| Sbjct 5277 CTT------CCAACAGAATCAATTTCATCGATAAAGATGATGGCAGGGGCCATCGATCTA 5330 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 ||| ||||||| || ||||| || || | ||| |||| || ||| ||||||| ||||| Sbjct 5331 GCAGTTGCAAACAAATCTCTCACTCGTGCTGCACCAACTCCGACAAACATTTCCACAAAC 5390 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || || || | ||| | ||| || ||||| || || ||||| || || Sbjct 5391 TCGGACGCATTTAGGGATAAGAAAGCTACTCCCGCCTCGCCAGCCACAGCCCTGGCTAGC 5450 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | || || ||||| ||||||||||| || || || ||| ||||| ||| ||| Sbjct 5451 AACGTTTTCCCTGTACCAGGTGGTCCACACAAGAGCACACCCCGTGGTATCCTTGATCCA 5510 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAA-AATTCTACAATTTCCTCAAGTTCATATTT 289319 | || || ||| |||| | |||| || || ||||| ||||| ||||| ||||| Sbjct 5511 CTGGCTTTGAATCGCTC-CGGCTTTCTAAAGAAATCAACAATCTCCTCTAGTTC-TATTT 5568 Query 289320 T-GCCTCATCACATCCTGCTACATCA 289344 | || || | |||||| | |||| Sbjct 5569 TAGCATCTCCTATTCCTGCAATATCA 5594 >seq3 Length=89890 Score = 105 bits (116), Expect = 2e-17 Identities = 225/329 (68%), Gaps = 14/329 (4%) Strand=Plus/Minus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| || ||||| || || || |||||||| | || || | || | || || Sbjct 49165 TACCTACGGCATCGATCTCATCGATGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTT 49106 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 | || | || | |||||||||||||| | ||| ||| ||| ||||| ||||| || | Sbjct 49105 CGAACAGGTCACGGACACGGGATGCTCCCACACCCACAAACAGCTCTACGAATTCTGATG 49046 Query 289148 CGGATACTTGA-ATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | || || | ||||| || || || ||||| || || ||| | || | | Sbjct 49045 CAGC-ACAGGAGAAGAATGGAGTTCCA---GCCTCGCCAGCCACAGCCTTGGCGATCAAC 48990 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 |||||||||||||| ||||| || | || ||| |||||||||| | || || || || Sbjct 48989 GTCTTACCTGTTCCTGGTGGACCGACCAAGAGAGCTCCCTTTGGAATCTTGGCACC--CA 48932 Query 289264 GACT---TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 ||| | || || || || |||| ||||| || || | ||||| ||||| |||| Sbjct 48931 -ACTTGGTGTACTTTTCTGGATTCTTCAAAAAGTCAACCAATTCCTGGAGTTCCAATTTC 48873 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAA 289349 || | || ||||| || || |||||||| Sbjct 48872 GCATTGTCGCATCCAGCGACGTCAGCAAA 48844 >seq769 Length=126215 Score = 91.5 bits (100), Expect = 4e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||| ||| | ||| || || || |||||||| | || ||||| |||||||||||| Sbjct 120054 TCCATTCTAACCTGATAGTTCGTCACGTACATACCCATGGCTTGCTTACCCATAGCACTC 119995 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-AC 252650 ||||||||||| | || || ||||||| || ||||| |||||| ||| || ||| || Sbjct 119994 TGGTAAGTATTACGTGGCGATTGATTGTGATCTGGGAATGGAATGATTGACGC-ACACAC 119936 Query 252651 ACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTA 252689 || | || || ||||| || ||||| || |||| Sbjct 119935 TCCCAGAATCATGGCAGGGTGGATCTCACAATGGGTGTA 119897 >seq429 Length=364352 Score = 91.5 bits (100), Expect = 4e-13 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||| || ||||||||||| | | || | | | ||| || |||| Sbjct 55906 CCAATAGCATCAATCTCATCAATGAAAATGATTGATGGGGCTTGTGCTCTAGCTTGTGCA 55965 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || || | | || |||| || ||| ||||||| | ||| ||||| | Sbjct 55966 AACAAATCCCTCACCCTCGCTGGACCAACTCCGACAAACATTTCCATAAAATCAGACCCA 56025 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || | ||||| || ||| || || || ||| | ||||| | |||||| Sbjct 56026 GATA-TCGACAAGAATGGCACGCCTGCCTCTCCAGCCGTAGCCTTTGCCAGCAATGTCTT 56084 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT- 289267 |||||||| || || || | | ||| || ||| ||| | | ||| ||| | || Sbjct 56085 TCCTGTTCCTGGAGGACCGACAAGCAGAGCT-CCTCTGGGAATCTTGGCCCCCAACTCTC 56143 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | ||||| | || |||||| || | |||| ||| | |||| |||||| |||| Sbjct 56144 TGTATTTACCTGGTTTCTTTAGGAAATTGACAAACTCCATGATTTCAACTTTTGCTTCAT 56203 Query 289328 CACATCCTGCTACATC 289343 |||| || || ||||| Sbjct 56204 CACACCCCGCAACATC 56219 >seq634 Length=251403 Score = 86.0 bits (94), Expect = 2e-11 Identities = 209/309 (68%), Gaps = 16/309 (5%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA---TTTTGTCTCGCAAT 289085 ||||| |||||||| || || || ||||| | ||| ||||| |||| | ||| Sbjct 245146 ACCAATTGCATCAATCTCATCGATAAAAATAATACATGGAGACGACTTTTTTGCTGCA-- 245203 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| || || ||||| || |||| |||||| |||| ||| |||| ||||| Sbjct 245204 -GCAAATAAATCCCTCACACGACGAGCACCAACGCCAACAAACATCTCTTCAAACTCAGA 245262 Query 289146 AGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | || || | ||| ||| | ||| || || || |||| ||||||||||| | Sbjct 245263 CCCAGACGTA-TAGAA-GAAAGGCACACCAGCCTCACCGGCTATCGCCCTCGCCAGCATG 245320 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 ||||| || || ||||| || ||| | | || || ||||||| ||||||| | Sbjct 245321 GTCTTCCCAGTCCCAGGAGGCCCCACCAGCAGCAC-GCCTTTGGGCAACTTGCCCC--CC 245377 Query 289264 GACT---TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 ||| || | || || || | | ||| | ||||||| || || || || ||| Sbjct 245378 AACTTGGTAAACTTATCCGGATCCCTCAAATACGCTACAATCTCTTCGAGCTCTCCTTTA 245437 Query 289321 GCCTCATCA 289329 ||||||||| Sbjct 245438 GCCTCATCA 245446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471801005256560