Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq880 782 0.0 seq152 93.3 5e-14 >seq880 Length=74269 Score = 782 bits (866), Expect = 0.0 Identities = 767/987 (78%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || ||||| || | ||||| | | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || ||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||||| ||||| ||||| ||| |||| ||||| |||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 |||||||||| || || | ||||||||| | || ||||||||||||| |||| | || | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 ||| ||| ||| || | ||| | | | | |||||||| |||||||||||| | || | || Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||||||||| || |||||| ||| || || || || ||||| |||||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| || | || || ||||||||||||||||||| |||| |||||| | |||| Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 |||| ||||| || |||| |||||||||||||||||| || ||||||||| | ||||||| Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | ||||||||| | ||||||||||| ||||| ||||| || | ||||| |||||||||| Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | || || ||||| ||| | | |||||||| ||||||| || ||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 ||||||| || |||||||| ||||| || || |||||||| || || ||||| ||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 ||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| ||||| || || || || |||||||| || | || | || || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | ||||| ||| | | ||||| ||| | ||||| ||||| |||||||| | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 158538 CACACAACTTCCCACTCGACCTTGCTG 158564 | |||||||| ||||| || | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 471 bits (522), Expect = 5e-128 Identities = 724/1022 (71%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 159294 TTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGA 159353 |||||||| | |||||||||||| || ||||| || || ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 159354 CTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 159413 || || | | || ||||||| | || | || || ||| | ||||| | | ||| Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 159414 GTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTC 159473 ||||| ||||| || || ||| | ||| ||| | | | || ||| ||| || | Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 159474 ACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159533 ||||| || || || || ||||| | |||||||||||| | | || | ||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 159534 CCTGAGTCTC-AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGT 159592 || || | | ||| || ||| | || ||||| ||| | || || ||||||| |||||| Sbjct 49743 CCAGAAGCACAAGGCGACTTTAC-TCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGT 49801 Query 159593 GGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG 159652 ||| | || ||| | || || |||||||||| ||| | ||||| ||||| | ||||| Sbjct 49802 TGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACG 49861 Query 159653 TCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159711 | ||| | || ||||| || || || || || ||||| | || ||||| ||||| | Sbjct 49862 T-TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCG 49920 Query 159712 TCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159771 | || ||| | ||||| || || ||||| || | ||||| || || || |||| Sbjct 49921 TATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTG 49980 Query 159772 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAA 159831 | || || |||||||| |||| | | ||| | ||||| || || |||||||| |||| Sbjct 49981 GTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAA 50040 Query 159832 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCC 159891 | || |||||||||||||| || |||||| | |||||| ||| |||| |||| |||| Sbjct 50041 ACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCC 50100 Query 159892 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 159951 |||| | |||||||| |||||| | | ||||||||| || |||||||| || | Sbjct 50101 ATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 50160 Query 159952 CGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGT 160011 | ||| | ||||||||| || || || || || ||||| ||||| || || ||||||| Sbjct 50161 CATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGT 50220 Query 160012 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTG 160071 | || || || ||| | || ||||| || || || ||| | |||||||| ||||| |||| Sbjct 50221 CACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTG 50280 Query 160072 TGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT- 160130 | || || | ||| | |||| | |||||| | | || | ||| |||| ||| Sbjct 50281 TACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTA 50339 Query 160131 CGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 160190 ||||| || ||||| ||| |||||| || | || || |||||||| ||||| || || Sbjct 50340 CGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACT 50399 Query 160191 TTCTACACCAAAAA-CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGA 160249 ||||| || ||||| ||| |||| | ||||| | || || ||| |||| || || Sbjct 50400 TTCTATACAAAAAATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGA 50458 Query 160250 TCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTA 160309 ||| || |||||||| || | |||||||| || ||||| || | || ||||| ||||| Sbjct 50459 TCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTA 50518 Query 160310 AT 160311 || Sbjct 50519 AT 50520 >seq152 Length=72664 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 158774 GCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAA 158833 |||||| |||| | |||||||| |||||||| || |||||||| || ||||| || Sbjct 24938 GCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGGAAAG 24997 Query 158834 ATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCA 158893 | ||||||||||||| ||| || ||||| ||||| || || || ||||| || Sbjct 24998 GTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGCC 25057 Query 158894 GCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTG 158937 |||||||| || || || || || || ||||| || || || Sbjct 25058 AATGGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGACTG 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548368367881600