Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq880 762 0.0 seq152 95.1 1e-14 seq879 86.0 7e-12 >seq880 Length=74269 Score = 762 bits (844), Expect = 0.0 Identities = 760/985 (77%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 |||||||| ||||| || ||| | |||||| | || |||||||||| ||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || ||||| || | ||||| | |||||| | ||||| ||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 || || || |||||||| |||||||| || ||| ||||||| | | |||||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 |||||||| ||||| |||||||| |||| ||||| || ||| | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 |||||||| || ||| | ||||| ||| | |||||||||||||||| |||| | ||||| Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 151139 TTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGC 151198 | || ||| | | ||| | | | ||||||||||||||||||||||| | |||| ||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 151199 TTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCA 151258 || ||||||||||| |||||| ||||| ||||| || ||||||||||| || | || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 151259 GTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATT 151318 || ||| || | || || |||||||||||||||||||||||| ||||| | ||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 151319 TCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCC 151378 || || |||||||||| ||||||||| |||||||| ||||||||||| | |||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 151379 TTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGT 151438 ||||||||| | ||||| |||||||| || ||||| || | ||||| || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 151439 TCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGT 151498 || || || |||||||| | | ||||| || || |||||||| || ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 151499 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGT 151558 ||||| || |||||||||||||| || ||||||||||| || || || |||||||||||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 151559 CGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCA 151618 ||| | ||||||||||||||||| || ||||| || ||||| | ||||||||| | || Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 151619 GCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAAC 151678 || ||||| || || ||||| ||||||||||| | ||| | || |||||||| ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 151679 CTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACC 151738 | || ||||||||||||||||| || | | ||| || || || | ||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 151739 TGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCT 151798 ||||| || || | |||||||| | ||||| ||||| ||||| || | |||||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 151799 CACAACTTCCCTCTCGACCTTGCTG 151823 |||||||| || || || | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 480 bits (532), Expect = 9e-131 Identities = 716/1005 (71%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 152371 GATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT-TT 152429 |||||||||||| | || |||||||| ||||| ||||||||||| || || || || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG-TTTATTATTATT 49573 Query 152430 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 152489 || ||||||| | || | || || ||| | ||||| | ||| || | || || Sbjct 49574 ACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATG 49633 Query 152490 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT-ACTGCGGCAG 152548 |||||| || || || || ||| | | | || || || |||||| || || |||| Sbjct 49634 GTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAG 49692 Query 152549 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 152608 ||||||| || ||| || |||||||||||| | | | | ||||| || || || | Sbjct 49693 TTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCAC 49752 Query 152609 AAGGGGA-TTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 152667 |||| || ||| || | ||| ||| | || || | ||| ||||||| || | || Sbjct 49753 AAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACAT 49811 Query 152668 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCA-TCGG 152726 || | || ||| |||| ||||| ||| | || || ||||| | |||||| ||| | Sbjct 49812 GGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT-TCAGTAAA 49870 Query 152727 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 152786 || ||||| || || || || || ||||| | || || || ||||| || || || Sbjct 49871 AATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTT 49930 Query 152787 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 152846 | ||||| ||| | |||||||| | ||||| || || ||| ||| || || || || Sbjct 49931 CTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGC 49990 Query 152847 AATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCA 152906 |||||||||||| | || ||| | ||||| ||||| |||||||| || || || || || Sbjct 49991 AATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCA 50050 Query 152907 TATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTAC 152966 |||||||||||| || ||| |||| || | || || || | ||| || ||||||| || Sbjct 50051 TATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAAC 50110 Query 152967 AGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAG 153026 ||||| || || || | | |||||||||| ||||| || ||| || || || Sbjct 50111 TGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCC 50170 Query 153027 CACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATT 153086 ||||||| ||||| || ||||| ||||| ||||| || ||||||||||| || || || Sbjct 50171 AACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTT 50230 Query 153087 TGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTAT 153146 ||| | || ||| |||||||| ||| | |||||||||||| | |||||||| || | Sbjct 50231 TGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 50290 Query 153147 GGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 153206 ||| | |||| | | ||||| | | ||| | ||| | || | ||||| || || Sbjct 50291 TGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGA 50350 Query 153207 TTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAA 153266 |||||||||||||||||| | || | |||||||||||||| || || |||||||| || Sbjct 50351 TTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAA 50410 Query 153267 GAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGA 153326 ||| | || | |||||| |||| |||||| |||| || || || |||||||| Sbjct 50411 AAATCATTTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGA 50470 Query 153327 GAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || || || ||||| || |||||||| ||||| || |||||||| Sbjct 50471 AAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 >seq152 Length=72664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 |||||||| |||||||| || || || || || || || ||| | | ||| || ||| Sbjct 24956 TACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGGAAAGGTCCAGGCTGGAACTGTT 25015 Query 152106 GATCAGAGTGACCAATCATTCTTGGATGATGACCAGATTG--AATCAGGATTCGTGCTGA 152163 || ||| ||||| || ||||||||||| |||||||| | ||| ||||| ||||| | Sbjct 25016 GACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGCCAAT--GGATTTGTGCTCA 25073 Query 152164 CCTGTGTTGCATATCCAACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTCGCTCT 152223 |||| ||||| || ||||| || || |||| || || | | |||||| | || | Sbjct 25074 CCTGCGTTGCCTACCCAACCTCCGACTGCACCATCTCCACCCACGAGGAGGAGGCCCTTT 25133 Query 152224 ACT 152226 ||| Sbjct 25134 ACT 25136 >seq879 Length=37587 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 148133 GGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATC 148192 ||||||||| || ||||||| ||||| | ||||||| | |||||||| ||||||||||| Sbjct 12384 GGGTGTAGCGCAGTTTGGTAGCGCGCCTGTTTTGGGAACAGGAGGTCGTAGGTTCAAATC 12443 Query 148193 CTGCCACCCCGA 148204 ||||||||| || Sbjct 12444 CTGCCACCCTGA 12455 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9896 ATCCCAAGTAGCTCAGTGGCAGAGCAGGTGACTGTTAATCACTCGGTCGCAGGTTCAAAT 9955 ||| | |||||||||||||||||||| ||| ||||||| || |||||| ||||||||| Sbjct 8801 ATCTCCAGTAGCTCAGTGGCAGAGCATGTGGCTGTTAACCATATGGTCGCTGGTTCAAAT 8860 Query 9956 CCTGCCTTGGGAG 9968 || |||| ||||| Sbjct 8861 CCAGCCTGGGGAG 8873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549616354153600