Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq880 755 0.0 >seq880 Length=74269 Score = 755 bits (836), Expect = 0.0 Identities = 763/988 (77%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 ||||||||||||||||| |||||| || || | ||| | |||||||||||||| ||| Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| ||| ||||||| || | ||||| | ||||| |||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| |||||||| || ||| | || || ||| | ||||| || ||||| ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 |||||||| ||||| || |||||| |||||||||| || || ||||| ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | || |||||||| || ||||| ||||||||||| |||||| | Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | || ||| | | || | | | | ||||||||| | |||||||| |||| | | | Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 |||| ||| | || ||||| ||| || ||||||||||| || ||||||| || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 |||||| | | || ||| ||||||| ||||| |||||||||||||||||| |||||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 |||||||| |||||||||||| | || |||||||| || |||||||| |||||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||||||| |||||| || ||| | || |||||| | ||| || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAA--AACTACG 72892 |||||||| ||||| || ||||| | || || || || ||||| ||| ||| | | Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAA--TCAGCTAACGAAG 60667 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || || || || |||||||||||||| || ||||| || ||||||||||| ||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 || | ||||||||||| || || ||||| ||||||||||||||||||||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 ||| | || ||||| || | ||||| || | | ||||| | || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCA 73131 || | || || ||||||||||||||||||||||||||| || | || ||| | || Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGG---TCGTGTAATCA 60430 Query 73132 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 ||| |||| ||| || ||||| | || ||| | || || ||||| ||||||||||||| Sbjct 60429 ACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAA 60370 Query 73190 ATGCACACAACTTCCCACTAGACCTAGC 73217 |||| |||||||| ||||| || |||| Sbjct 60369 ATGCTCACAACTTTCCACTTGATTTAGC 60342 Score = 522 bits (578), Expect = 3e-143 Identities = 746/1042 (72%), Gaps = 29/1042 (3%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 || ||| || ||||||| ||| | | |||||||||||||| | || ||||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 | ||| | |||||||||||||| ||||| | || || ||||| |||| ||| || Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| ||||||||| | || || |||| | | || || ||||| ||| Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || ||||||| || |||||||||| |||| || | ||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 ||||| |||||||| || || || |||| |||||||||||| |||||| ||||| Sbjct 49743 CCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTT 49802 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 ||||||||||| |||| | || ||||| ||| | | || |||||||||||| | Sbjct 49803 GCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT 49862 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 || || ||||| || |||||| | ||||| |||||| || ||||| ||| Sbjct 49863 TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTC-GT 49921 Query 73784 AGCATCTTTC-TAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGG 73842 | || |||| |||| ||||||||||| || | | |||||||| ||||| || || Sbjct 49922 ATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGG 49981 Query 73843 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 73902 ||| || |||||||| || | ||| ||||| | || |||||||| || ||| | || Sbjct 49982 TGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAA 50041 Query 73903 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 73962 ||||| ||||||||||||||||| ||| | | |||| ||| ||||||||||| || || Sbjct 50042 CCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCA 50101 Query 73963 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 74022 ||||||||| ||| | |||||||| | |||||| || | | | | Sbjct 50102 TGGTGCAACTGTAGAAAACACATTATTTGAAGA---------------TG--GTGATGGT 50144 Query 74023 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGAT 74082 ||| |||| ||| | ||||| | || || || | ||||| || ||| ||| | Sbjct 50145 GCAA-ATACA---TTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGT 50200 Query 74083 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 74142 ||||| || | ||||||||||| || |||||| ||||||||||||| ||| | | || Sbjct 50201 AACTGCGAATCGTTTCTGGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTT 50260 Query 74143 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 74202 ||| ||| ||||||| || ||||| || | ||| | |||| | || || | || Sbjct 50261 ACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGT 50320 Query 74203 AGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAG 74261 |||| |||| |||| |||| | ||||| || |||||||||||||| || | || || | Sbjct 50321 AGGTTTAGC-TTTAAACTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGG 50379 Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAA-CATTCTTCTTA-ATGAAGGTATGAG 74319 |||| || || || ||||| ||||| || || || ||| || ||| |||||||| | | Sbjct 50380 AAGATCCTGAATTCGAAACTTTCTATACAAAAAATCAT--TTATTAGATGAAGGTGTTCG 50437 Query 74320 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 74379 ||| |||||| | || ||||| || ||||| || || || |||||||| || || || Sbjct 50438 AGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATT 50497 Query 74380 GCCACGAGGCAACGCACTATAA 74401 ||||| || ||||| || ||| Sbjct 50498 ACCACGTGGAAACGCTCTTTAA 50519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572867298390400