Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq232 111 2e-18 seq684 91.5 2e-12 >seq232 Length=44964 Score = 111 bits (122), Expect = 2e-18 Identities = 218/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||| |||||| |||||| || | || || | || || ||||| Sbjct 11741 CCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTT 11682 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| | ||||||||||| || ||||| || || || || ||| ||| || Sbjct 11681 TTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAAT 11622 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || | ||||| || |||| || | ||| ||||| |||| ||||| Sbjct 11621 GCAACCAATCGCTCTGCGAAAGAATCGCTGGACTC------AATCCATCTCATGGCCCAA 11568 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 |||||||| ||| ||||| || || || |||||||| | || || | || ||| || Sbjct 11567 TCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGAACAGCTTGTTCTTTTCA 11508 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || ||||||| ||| || || | ||||| || |||| || || || || Sbjct 11507 ACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCTCGCTATGAATATTCTCA 11448 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 |||||||| ||||| |||||||| Sbjct 11447 ATGGCGATTTGGAATCCATAAAA 11425 Score = 87.8 bits (96), Expect = 3e-11 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 |||||||| || | | |||||| || || ||||| |||| | || |||| |||||| Sbjct 12047 TACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTTCCCTGCAAAGAAATCAGTTCCATC 11988 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||| || ||||| ||| ||| || ||| || | | || || | Sbjct 11987 CAATCGAATGGATTGGCAACATTGTACACCTTGTCATTCCCCAGGGCAACCAGAAGTCTA 11928 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || |||||||||||||| ||||||| |||||||||||||| || | || Sbjct 11927 TCAGCTACAAATTCAATGTACTGTGACATGAGCCTCGCGTTCATGCCGATCAGGTCGACA 11868 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 ||||| | |||| | |||||| ||||| | || ||||| Sbjct 11867 GGCAGGGCGTCGCAAATAAACTCCTTCTCTAATTCAACGGC 11827 >seq684 Length=119390 Score = 91.5 bits (100), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || ||||| |||||||||||| | | || || || | | | Sbjct 22594 ACTTGGTCACAGCCTTTGTTCCCTCAGAGACGGCGTGCTTTGAGAGCTCTCCTGGGAGAA 22535 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT----GTTG--CGCTTGTTAG 1485586 | || || || || || ||||||||||| ||| ||| |||| |||||| Sbjct 22534 TAAGACGGACAGCAGTTTGGATCTCGCG-----CGA-CGTAACAGTTGGCTTCTTGTTGT 22481 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| |||| | | || ||| || | || ||||| || || |||| || |||| Sbjct 22480 AGCGAGCCAAGTTGGTGGTTTCGTTGGCAATTTTGTCGAAAATATCATTGATGAAGGAGT 22421 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | ||| ||| || || || ||||| ||||| || ||||||| Sbjct 22420 TCATGATGGACATGGCCTTGGAGGAAATACCAGTATCTGGGTGAACCTGTTTCAGCACCT 22361 Query 1485707 TGTA 1485710 |||| Sbjct 22360 TGTA 22357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916152790386320