Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq634 116 2e-21 seq221 114 8e-21 >seq634 Length=251403 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| | ||||||| || | ||| |||||| || |||||||| || | Sbjct 209649 TTCCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTG 209590 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || ||||| |||| |||| |||||||| ||||| |||| || ||||| || | | Sbjct 209589 CTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTG 209530 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || ||||| | | || | ||| | ||| | Sbjct 209529 GAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCA 209470 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || ||||| || || |||||||| ||||| Sbjct 209469 CCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq221 Length=83180 Score = 114 bits (126), Expect = 8e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | ||||| || |||| ||| | || |||||||||||| || || || | Sbjct 43849 TCCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGC 43908 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 | | ||| |||| || || ||||| || ||||||||||||| ||||| || |||| Sbjct 43909 CAATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGG 43968 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | ||||||||| || | ||||| ||||| || || |||| || | |||| Sbjct 43969 GATCCCCTCCTTATCCTGAATTTTCGACTTGAC--ATTCTCAATCGTATCTGAAGACTCG 44026 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | |||||||||||| || || || || || || || ||||||||| Sbjct 44027 ACCTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689306944720