Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq429 149 5e-31 seq634 136 3e-27 >seq429 Length=364352 Score = 149 bits (164), Expect = 5e-31 Identities = 180/241 (75%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 29548 TTTTATCGTTGTCCTCCC-CTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAAT 29606 ||| ||| | ||| ||| | ||| || || ||||| || | ||| || || ||||| || Sbjct 147051 TTTAATCATCATCCCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGAT 146992 Query 29607 GTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTG 29666 |||||||||||| | |||||| ||| || | || || ||||| | |||||||| || Sbjct 146991 GTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTG 146932 Query 29667 CTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGT 29725 |||||| || || || |||||||| || || ||| || | |||||| | || | || | Sbjct 146931 CTGATCAGGTGGGATCCCCTCTTTATCCTG-AATCTTCGACTTGACATTCTCAATCGTAT 146873 Query 29726 CAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 |||| |||||||| ||||| |||||||| || || | ||||||||| || ||||||| Sbjct 146872 CAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCA 146813 Query 29786 T 29786 | Sbjct 146812 T 146812 >seq634 Length=251403 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||||||| || |||||||| | || || || ||||| ||||||||||| || Sbjct 209648 TCCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGC 209589 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | || || ||||| | ||||| | |||||||| || || Sbjct 209588 TAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGG 209529 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| ||||| || ||| || | |||||| |||| | |||||||||| || | Sbjct 209528 AATTCCCTCCTTGTCCTG-AATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCA 209470 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || || | ||||| ||||| || ||||| Sbjct 209469 CCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215068524080