Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq880 695 0.0 seq152 84.2 2e-11 >seq880 Length=74269 Score = 695 bits (770), Expect = 0.0 Identities = 745/985 (76%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || |||||||||||| ||| | |||||||| || | |||||||| ||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || | | | ||||||| ||||| | ||||| | || || ||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || ||||||||||| ||||| || || || ||| ||||||| | | || || |||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 |||||||| ||||| |||||||| |||||||||| || ||| | || |||||||| ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| || || | ||||||||| | |||||||||||||||| |||| | || || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 | ||| ||| | | || | | | | || ||||| |||||||||||| | |||| |||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||||||||| || |||||| |||||| ||||| |||||||| ||||| || | || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| || | || || ||||||||||||||||||| |||| |||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 || ||||| || |||| ||||| || ||||| || |||||||| || | ||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 ||||| ||| | || |||||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 157651 AGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGGT 157710 || || ||||| || | | |||||||| ||||||| || ||| ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 157711 TACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGT 157770 ||||| || |||||||||||||| || ||||||||||| ||||| || |||||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 157771 CGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCC 157830 || | |||||||||||||||||||| |||||| | | ||||||||| | || Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 157831 GCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 157890 || ||||| || || || || ||||||||||| | || | || |||||||| ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 157891 CTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 157950 | || ||||||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 157951 TGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCA 158010 ||||| ||| | | ||||| ||| | ||||| ||||| |||||||| | || || Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 158011 CACAACTTCCCACTGGATCTTGCTG 158035 |||||||| ||||| ||| | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 453 bits (502), Expect = 1e-122 Identities = 720/1017 (71%), Gaps = 14/1017 (1%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 || ||||| | || ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG- 49561 Query 158835 CTTCTTCTT-CTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTT 158893 || || || |||| ||||||| | || | || || ||| | ||||| | || || Sbjct 49562 TTTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATT 49621 Query 158894 CGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCT 158953 | ||| |||||||||||||| | ||| |||| | | | || ||| || ||||| Sbjct 49622 TGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCT 49680 Query 158954 T-ACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 | ||||| |||||||| || || || || |||||||||||| | | | | |||| Sbjct 49681 TAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGG 49740 Query 159013 GTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTT 159071 | || || || ||||| || ||| || | ||| ||| | || || | |||| |||| Sbjct 49741 GCCCAGAAGCACAAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTT 49799 Query 159072 GTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCA 159131 || || | || ||| | ||||| |||||||||| ||| | || || ||||| | ||| Sbjct 49800 GTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCA 49859 Query 159132 CGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159190 ||| ||| | || ||||| || || || || || ||||| | || ||||| ||||| Sbjct 49860 CGT-TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTT 49918 Query 159191 TGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 159250 || || ||| | ||||| || | ||||| || | ||||| || || || || Sbjct 49919 CGTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTT 49978 Query 159251 TGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACT 159310 ||| || |||||||| ||| | || | || ||| | ||||| ||||| || ||||| | Sbjct 49979 TGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTT 50038 Query 159311 AAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTAT 159370 |||||| |||||||||||||| || |||||| | |||||| ||| | |||| |||||| Sbjct 50039 AAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTAT 50098 Query 159371 TCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAA 159430 ||||| | || || ||||| ||||||| || ||||| || ||||| || || Sbjct 50099 CCATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCG 50158 Query 159431 GGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 159490 || ||| | ||||||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 50159 TGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTG 50218 Query 159491 GTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTT 159550 ||| || || || || | || ||||| || || || ||| | |||||||||||||| || Sbjct 50219 GTCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATT 50278 Query 159551 TGTGCCTGTTATGGGTCTATGGA--CATCCAGTATTGGCATTATTGGTCTTGCTCTCAAT 159608 ||| || || | ||| |||||| | || |||||| | | ||| | ||| | || Sbjct 50279 TGTACCAGTAACTGGTTTATGGATGAGTGCA--ATTGGCGTAGTAGGTTTAGCTTTAAAC 50336 Query 159609 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAA 159668 | ||||| || ||||| || |||||| || | || || |||||||| ||||| ||| Sbjct 50337 TTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAA 50396 Query 159669 ACGTTCTACACCAAGAA-CATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGC 159727 || ||||| || || || |||| | | ||||||| | || |||||| |||| || Sbjct 50397 ACTTTCTATACAAAAAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCA 50455 Query 159728 TGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||||| || |||||||| || | |||||||| || || ||||| | || ||||| Sbjct 50456 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGC 50512 >seq152 Length=72664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 158246 GCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAA 158305 |||||| |||| | |||||||| |||||||| || |||||||| || ||||| || Sbjct 24938 GCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGGAAAG 24997 Query 158306 ATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCA 158365 | ||||||||||||| ||| || ||||| ||| | || || || || || || Sbjct 24998 GTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGCC 25057 Query 158366 GCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTG 158409 |||||||| || || || || || || ||||| || || || Sbjct 25058 AATGGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGACTG 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545267601990400