Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq880 733 0.0 seq152 105 8e-18 >seq880 Length=74269 Score = 733 bits (812), Expect = 0.0 Identities = 759/993 (76%), Gaps = 1/993 (0%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677 ||||| || ||||| || | ||||||| |||||| |||| || |||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 177737 || || || ||||| || |||||||| || || |||||||| | | || ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 177738 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 177797 |||||||| ||||| ||||| ||| |||| ||||| |||||| | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 177798 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 177857 |||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 177858 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGT 177917 | ||| ||| | | || | | | | || ||||| |||||||||||| | || | |||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 177918 CTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 177977 |||||||||| || |||||| |||||| ||||| ||||| ||||| ||||| | || Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 177978 GTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATC 178037 || || | | || || ||||||||||||| ||||| |||| |||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 178038 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCG 178097 || ||||| || |||| |||||||||||||||||| || ||||| ||| | |||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 178098 TTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 178157 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| |||||||| || Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 178158 AGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGT 178217 || || |||||||| | ||||||| || || |||| || || ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 178218 TACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGT 178277 ||||| || || |||||||||||||| || |||||||| || || ||||||||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 178278 CGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 178337 ||||| ||||||||||| || || || |||||||| |||||| | ||||||||| | || Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 178338 GCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAAC 178397 || ||||| |||||||| || |||||||| || | ||| | || || |||||||||||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 178398 CTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACA 178457 | ||||| |||||||||||||| || | | || |||||| ||||| ||||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 178458 TGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGC 178517 ||||| || | | |||||||| | || || ||||| ||||| ||||||||| || Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAAT-GC 60366 Query 178518 ACATAACTTCCCGCTTGATCTTGCAGCAGCTGA 178550 || ||||| || |||||| | || | || ||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTGTAGTTGA 60333 Score = 462 bits (512), Expect = 3e-125 Identities = 714/1006 (71%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 |||||||||||| ||| ||||| || || ||||| ||||||||||| | || | | Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 179011 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179070 || ||||||| | || | || || ||| | ||||| | | |||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 179071 TACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 179129 || || |||||| | ||| ||| | | | |||||| ||| |||||| || || || || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAGT 49693 Query 179130 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC- 179188 || || ||||| || |||||||||||| | | || | ||||| || || | | Sbjct 49694 TTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACA 49753 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 ||| || ||| | || ||||| ||| | || || |||||| ||| || || | || | Sbjct 49754 AGGCGACTTTAC-TCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATG 49812 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCA-TCGGT 179307 || | || || ||||||| || ||| | ||||| ||||| | |||||| ||| | Sbjct 49813 GTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT-TCAGTAAAA 49871 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 || ||||| || || || || ||||| | | || ||||| || ||||| || || Sbjct 49872 ATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTC 49931 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 | ||||| || | || ||||| | ||||||||||| ||| ||||||||||| || Sbjct 49932 TTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCA 49991 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 ||||| |||| | || ||||| ||||||||||| |||||||| | ||||| || || Sbjct 49992 ATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCAT 50051 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 |||||||| || || ||| | | |||| || | || | |||||| ||||| | |||| Sbjct 50052 ATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACT 50111 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| || ||||| | ||||||||| || ||||| ||||| || || || | Sbjct 50112 GTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCA 50171 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || ||||| ||||| ||||| || || || Sbjct 50172 ACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTT 50231 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 || || | ||| ||||| |||||||| || ||||||| | | ||||| || || | Sbjct 50232 GGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 50291 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTT-CGTGCTTATGA 179786 ||| | ||| | | | |||||| | | || ||||| |||| ||| ||||| ||||| Sbjct 50292 GGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGCATATGA 50350 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 |||||| |||||| || | || || ||||||||||| ||||| || ||||||||||| Sbjct 50351 TTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAA 50410 Query 179847 GAA-CATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 || |||| | | ||||||| | || |||||| |||| || ||||| || |||| Sbjct 50411 AAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATG 50469 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| || | |||||||| || || |||| |||| ||||| || Sbjct 50470 AAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 >seq152 Length=72664 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 138555 TGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGC 138614 |||| | ||||| ||||| || || ||||| || |||||||| || || ||| |||| || Sbjct 24931 TGATCATGCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGC 24990 Query 138615 TGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCA 138674 || || | | |||||||| || ||||| |||||||||||| | ||||| ||||| Sbjct 24991 AGGAAAGGTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCA 25050 Query 138675 AATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACATCCGATTG 138725 || || |||||| | | || ||||| || ||||| || ||||| || Sbjct 25051 GATGGCCAATGGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGACTG 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605660537660800