Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq779 125 5e-23 seq556 113 3e-19 seq249 91.5 1e-12 >seq779 Length=187291 Score = 125 bits (138), Expect = 5e-23 Identities = 218/316 (69%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 ||||||| || ||| | ||| |||| ||| |||||||| || || |||||||| | Sbjct 104645 TCTTGAACTCATCAGCCAGCCAGTCAACAATACGCTTATCAAAGTCATCTCCTCCCAAGT 104586 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 |||| ||| || || | || | || | |||||| | | | || || | Sbjct 104585 GGGTATCTCCGGAAGTGGACAACACCTCAAAGACACCATCTCCGACCTCGAGAACAGACA 104526 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335 ||||| |||||||| |||| |||||| | ||| | | |||| ||| | | | Sbjct 104525 CATCAAACGTTCCACCTCCCAAATCAAAGACAAGGA---TGGTTTCGTTGGACT---TCT 104472 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 ||||||||||||| || |||| |||||||| || ||||| ||||| | | || | | Sbjct 104471 TATCAAGACCATAGGCCAAAGATGCAGCAGTAGGCTCATTGATAATACGAAGCACTTCCA 104412 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 ||||||||| | || ||||| || || || ||||| || ||||| ||||| || || | Sbjct 104411 AACCAGCAATCTTACCAGCATCCTTCGTAGCCTGTCTCTGAGAATCATTAAAGTAAGCTG 104352 Query 282456 GAACAGTAATAACGGC 282471 | |||||||| || || Sbjct 104351 GGACAGTAATCACAGC 104336 >seq556 Length=75407 Score = 113 bits (124), Expect = 3e-19 Identities = 205/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 || || || || |||||||||||||||| || || |||| || || ||| | Sbjct 29609 TGCACACTCATCCTGACAGAGGGAGATTCTGCAAAGTCATTGGCCATCAGTGGTTTGTCA 29668 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||| ||||||||||| || ||||| ||||||||| |||||||| | |||||||| | Sbjct 29669 GTTGTTGGAAGAGATCGATACGGAGTCTTCCCACTTCGAGGAAAATTGCTGAATGTTCGA 29728 Query 400417 GATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCA--ATCaaaaaaaTTG 400474 ||||| ||| ||| |||| | | || | ||||| || || ||||| | ||| Sbjct 29729 GATGCCAGTGCTAGTCAAATCACTGGCAACGCAGAAAT--CAACAATATCAAGCAGATTT 29786 Query 400475 TTGGACTTGAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTA 400534 | || || | || ||||| || ||||| ||| |||| | |||||||| | | Sbjct 29787 TGGGGCTCCAGCATGGAAAGGTCTATGAGGATGTCAAGTCCCTGCGATATGGGCACTTGA 29846 Query 400535 TGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTT 400592 |||| | | ||||| ||| ||||| | || || || ||| | ||||||||||| Sbjct 29847 TGATCATGACGGATCAGGATCACGATGGATCTCACATTAAGGGACTTATCATGAATTT 29904 >seq249 Length=40845 Score = 91.5 bits (100), Expect = 1e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 432280 GATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGT 432339 |||||| ||| || |||||||| || | || ||| ||||||| ||| | || ||| | | Sbjct 14911 GATTGAAAGGAAAGGAAGGTCGCGTTCGCGGTAATCTGATGGGGAAGAGAGTGGATTTTT 14852 Query 432340 CTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 | || ||||| || || ||| |||||| ||| |||| | ||||| ||||||||||| Sbjct 14851 CAGCTCGTACTGTCATCACTGGTGATCCAAATCTTGCATTGGATGAACTTGGTGTTCCTT 14792 Query 432400 TCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 432454 ||||| ||||||||| ||| || | || ||| |||||||| || Sbjct 14791 GGGCGATTGCTTTAAATCTTACGTTTCCAGAGGTCGTGACACCTCATAATATGGA 14737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740587195718880