Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq308 134 4e-26 >seq308 Length=25397 Score = 134 bits (148), Expect = 4e-26 Identities = 295/434 (68%), Gaps = 15/434 (3%) Strand=Plus/Minus Query 188779 GGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTA 188838 || |||||||||| || || |||||||| || |||||||||| | || | | || Sbjct 11114 GGTCCTACTGGTTGCGGCAAGACATTATTGGCGAAAACATTGGCAAAATTGGTGAACGTG 11055 Query 188839 CCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTG 188898 || | || || | |||||||| || | ||| | ||||| ||||| || || ||||| Sbjct 11054 CCATTTGCAATGGCAGATGCAACAACTCTGACACAGGCTGGATATGTTGGAGAGGATGTT 10995 Query 188899 GAAAACGTATTGCTTC--GTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG--- 188953 || | | || || | | | | ||| | || | | || ||| | | | || | Sbjct 10994 GAGAGCATACTG-TACAAGCTGTATC-AGGCTTCAGGATATGAT---GCAGTGGCTGCTC 10940 Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013 ||| || ||||| |||||||| ||| | ||||||||| | || || || |||| | | Sbjct 10939 AACAGGGTATTGTGTATATCGACGAAATTGATAAAATTACCAGGAAGTCGGAAA--ATGT 10882 Query 189014 C--CATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGA 189071 | |||||| |||||||| |||||| ||||| |||||||| || || | || |||| Sbjct 10881 CAGCATTACTCGAGATGTGAGTGGCGAGGGAGTTCAGCAAGCATTGTTGAGGATGCTTGA 10822 Query 189072 AGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCT 189131 || || || | || ||||| |||| ||| | || | |||| || | | Sbjct 10821 GGGAACGGTCGTCAACGTTCCAGAAAAAGGAGGTAGAAAGAATCCTCGTGGCGAGTTTAT 10762 Query 189132 TGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAA 189191 | |||||||||||| ||||||||||| || |||||| || |||| ||||| || || Sbjct 10761 TTCAATAGATACAACAAATATCTTGTTCATCTGTGGTGGGGCTTTTGTGGGTCTGGATAA 10702 Query 189192 CATTATCA-AGAGA 189204 | |||| ||||| Sbjct 10701 ACTGATCACAGAGA 10688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591892451210240