Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq221 134 3e-26 seq429 131 3e-25 seq634 125 1e-23 seq354 122 2e-22 seq457 114 3e-20 >seq221 Length=83180 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| || || || |||||||| ||||| || ||||| ||||| ||||| | Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || || ||||| ||||| ||||| || ||||| || || Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||| || | || ||||| ||||||||||| || || || Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACC 44029 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| ||||| || |||| || || || || |||||||| Sbjct 44030 TCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 >seq429 Length=364352 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| || ||||| ||||| | || || || || || || |||||||| | Sbjct 147038 CCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCC 146979 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || |||||||| || || | ||| || ||||| || || Sbjct 146978 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGG 146919 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| |||||||| | || ||||| |||||||||||| | |||||| Sbjct 146918 ATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTACT 146859 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || || || |||| || || || || |||||||| Sbjct 146858 TCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq634 Length=251403 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||| || || || |||| ||||| || || || || |||||||| | | Sbjct 209647 CCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCT 209588 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | || |||||||| || || | | || ||||| || || Sbjct 209587 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGA 209528 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || |||||||| | || |||||||| || || ||| || || || Sbjct 209527 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACC 209468 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 209467 TCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| || || || ||||||| ||||| || ||||| || || ||||| | Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || || ||||||||||| || | || ||||| || || Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||| | || ||||||||||| |||||| | ||||| Sbjct 2056 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACC 2115 Query 82764 TCCAAAGTTATCGTCTTGCC 82783 || | || || |||||||| Sbjct 2116 TCAAGCGTGATGGTCTTGCC 2135 >seq457 Length=513114 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 143940 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCAT 143999 ||||| | |||| |||| ||||||| ||||| || | | || | || ||||| Sbjct 411682 ATTTACAGAGATGAAGACGAGTGGAAATCTTGGCAAGCTAAAGGGGACACTGTTGTGCAT 411741 Query 144000 ATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTA 144059 ||||| || ||| |||||| |||| | | | || || || ||| | || ||||| || Sbjct 411742 ATAGATCTCCGGAAATGGGCAGATGCTATGGTCATTGCTCCTTTATCTGCTAATACTCTA 411801 Query 144060 GCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 144119 || |||||||| ||||| | |||||||||||||| |||| ||| || |||| ||||| Sbjct 411802 GCTAAAATAGCTCATGGTTTGTGCGATAATTTACTGACATGTATTGTGCGAGCTTGGGAC 411861 Query 144120 ATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGG 144167 | || || || | || | || || ||||||||| |||||||| Sbjct 411862 TTCAACAAGCCAATGCTTCTGGCACCAGCAATGAATACCTTTATGTGG 411909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816129898320