Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq221 120 3e-22 seq354 95.1 1e-14 seq429 87.8 2e-12 >seq221 Length=83180 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| ||||||||||| ||| || | ||||| |||||||| || Sbjct 43880 GTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCCTCAAGCTGCTTCCCA 43939 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 ||| | || || | |||||| || || ||||| || ||||| || ||| ||| | ||| Sbjct 43940 GCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTTATC-CTGAATTTTCGACTT 43998 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||| || | | ||| || |||| ||| | ||| || || ||||| || Sbjct 43999 GACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTCTTCCCAGTCAGTGT 44058 Query 133643 TTTTACGAAAATCTGCATGG 133662 ||| |||||||||||||||| Sbjct 44059 TTTGACGAAAATCTGCATGG 44078 >seq354 Length=2136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| ||| |||| | ||||||||||||||||| Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| |||||||| || || || || ||||||||||| ||||| |||| Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | |||| || || | | ||| || || | |||| ||| ||||| Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCC 2135 >seq429 Length=364352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || |||| || ||||| || || || || ||||| ||| ||| | || || | | Sbjct 147017 AAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAAC 146958 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | | |||||| || || ||||| || || || || ||| Sbjct 146957 TGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATC 146898 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||| || | | ||| || || | || | ||||| || Sbjct 146897 TTCGACTTGACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCC 146838 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| |||||||||||||| Sbjct 146837 GTCAGGGTTTTAACGAAAATCTGCAT 146812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415482371200