Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq457 89.7 1e-12 seq180 87.8 4e-12 >seq457 Length=513114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAG-ATGATTCCGCTAATTTTTCTACAAG 131859 ||||| || | ||||| || ||||||||||| || | | | |||| || | | Sbjct 80379 AAGAAGGCTGCGTGGGCGATCAAATGGATTCAGTCATCAATGTG----TTTTGCTGAACG 80434 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 | || || ||||| ||||| ||||| || |||||| || |||||||| |||| | Sbjct 80435 GTTGGTGGCGTTTGCATGTGTGGAAGGGATTCACTTTTCGGGGTCTTTCTGTTCTATTTA 80494 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | |||||| | |||||||| || | | || || ||| | ||||||| || Sbjct 80495 TTGGTTGAAGAAGAGATTGTTGATGCCAGGGTTGACGTTTTCGAATGAGCTCATCTCTAG 80554 Query 131980 AGATGAAGCATTGCATACTGAATTTGC 132006 |||||| | ||||||||||| || || Sbjct 80555 AGATGAGGGCTTGCATACTGATTTCGC 80581 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 121346 CCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGA 121405 || ||||||||||||||||| || || | || ||||| |||||||| || | ||||| Sbjct 100928 CCAGAAATCATATTCTTAATGAAATCTCTGTGTCCTGGGGCATCAATGATGGTGTAATGC 100987 Query 121406 TAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCT 121465 | || ||||| || ||||| || | || | || | || || ||||||| Sbjct 100988 CACTTCTCAGTGTAGAACTCCTTGGTTGTGCAGGAGATGGTCACACCACGAGCACGCTCC 101047 Query 121466 TCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCA 121525 ||||| | | |||||||| | || || || ||| ||| || ||| ||| | || Sbjct 101048 TCCTTCTGTCTGTCCATGTAGAAGGCGAAAGCGAAAGAAGACTTTCCGAGAGCGGCAGCC 101107 Query 121526 AGTTCCTGCAACTTCGCCATCTCACG 121551 ||||| ||||||| ||| |||||| Sbjct 101108 TCTTCCTTCAACTTCTCCAACTCACG 101133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/122 (76%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 113000 AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAA 113059 |||||| | || | ||||||||||| ||||| || || | ||||||||||| || || Sbjct 208004 AAACTCCTTGCTTGTAGCACCAATGCCAACAGCATCAACATCCCAGATTCTCGGGAACAA 207945 Query 113060 TGAATGTTTCGAGCCAATTACAAGT--AATATTTATGTCCGACGTGTTCTAGCAGGTGAG 113117 ||| || ||||||||| |||| | || ||||||||| || | ||||| |||| ||| Sbjct 207944 TGAGTGCTTCGAGCCA--TACACTTCAAACATTTATGTCAGAAGAGTTCTCTCAGGAGAG 207887 Query 113118 TT 113119 || Sbjct 207886 TT 207885 >seq180 Length=124539 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||||||||| ||||| || || ||||||| | || || ||||| ||| || | | Sbjct 85878 GTTCTGTTCAACAGGCAGCCTTCTCTGCATAGGTTATCAATCATGGCACATCGTGTGAGA 85937 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | ||| ||||| ||||| |||| ||| || | || || ||||| ||| Sbjct 85938 GTGCTTGAAGGAAGAACATTGCGATTTAATGAGTGTGTATGCGCCCCATACAATGCAGAT 85997 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||||| || ||| Sbjct 85998 TTTGATGGGGATGAAATGAATCTTCATGTTCCGCAA 86033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186799418685680