Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq880 621 1e-173 >seq880 Length=74269 Score = 621 bits (688), Expect = 1e-173 Identities = 677/889 (76%), Gaps = 10/889 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 ||||| || ||||| || || ||||| |||||||| || ||||| ||||| || || || Sbjct 61231 TTCATCATCGCATTTATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTT 61172 Query 19658 TCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAA 19716 || ||| | || || || || ||||||||||| || || || || ||||| | || Sbjct 61171 TCTGGTT-CATTATTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAA 61113 Query 19717 TGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTA 19776 || || || |||| ||||||||||| ||||||||| ||| | ||||| ||| | || Sbjct 61112 CGCGATTGGTTTACATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATA 61053 Query 19777 CAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACAT 19836 |||||| || || | |||| | || || | || ||| || | || | | | ||||||| Sbjct 61052 CAACGGTGGTCCTTACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACAT 60993 Query 19837 GGGACGAGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTGTTGCCT 19895 ||| || ||||||||| ||| || || | |||| ||| | || ||||| |||||| | Sbjct 60992 GGGTCGTGAGTGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTT 60934 Query 19896 ACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTA 19955 |||| || || ||||| || || | || || || || | ||||| | ||||| ||| Sbjct 60933 ACTCAGCACCAGTTGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTT 60874 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 ||||| |||| |||||| || |||||||| ||||| ||||||| |||| | ||||||| Sbjct 60873 CTTTCTCTGATGGTATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCC 60814 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCG 20075 |||| || || ||||| | |||||||| ||||| ||| | ||||| ||||||||||| | Sbjct 60813 AAGCTGAGCACAACATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTG 60754 Query 20076 GTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGA 20135 |||| ||| ||||| || ||||||||||| ||||| || || || | | ||||| | Sbjct 60753 GTGGTTCATTATTCTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAA 60694 Query 20136 CTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTA 20193 |||||||| | ||| |||| ||| | |||||||| ||||| ||||||||||| || || Sbjct 60693 CTACTGAAAACGAA--TCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTA 60636 Query 20194 TAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAA 20253 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || Sbjct 60635 CAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAA 60576 Query 20254 CAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGC 20313 ||| ||||| ||||||||||| | ||||| ||||| || || || ||||||||| | Sbjct 60575 CAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCAC 60516 Query 20314 TGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCT 20373 ||| || || |||| || ||||| ||||| | || ||||||||||| ||||| || | Sbjct 60515 TGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGT 60456 Query 20374 TCTCGACA-ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATC 20432 | | || |||| |||||||| || | ||||||||||| ||| | || |||||||| Sbjct 60455 TGTAGATTCACAA-GGTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACT 60397 Query 20433 TCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 | || |||| || ||||||||| | |||||||| ||||| |||||||| Sbjct 60396 TAGGTATTGAAGTAATGCATGAAAGAAATGCTCACAACTTTCCACTTGA 60348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148827244739040