Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq880 585 8e-163 >seq880 Length=74269 Score = 585 bits (648), Expect = 8e-163 Identities = 734/1002 (73%), Gaps = 4/1002 (0%) Strand=Plus/Minus Query 28617 TAACCCTTGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGG 28676 || || ||||| | |||| | | ||||| ||| || | |||||| | || | || Sbjct 61340 TAGCCTTTGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGG 61281 Query 28677 GTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGCTTCATTATTGC 28736 |||||||| | | ||||| || ||| | | || || | ||||| || || Sbjct 61280 TTGGTTTGGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGC 61221 Query 28737 ATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCT 28796 ||| || || || || |||||||| || ||||| ||||| || ||||| |||| | Sbjct 61220 ATTTATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATT 61161 Query 28797 TCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACT 28856 | || || ||||||||||| || || || || || || | || || || || | Sbjct 61160 ATTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTT 61101 Query 28857 ACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 ||| ||||||||||| ||||||||| ||| | ||||| ||| | |||||||| || || Sbjct 61100 ACATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCC 61041 Query 28917 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTG 28976 | |||| | || || | || ||| || | || || | | |||||||||| || ||||| Sbjct 61040 TTACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTG 60981 Query 28977 GGAACTTAGCTATC-GACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||| ||| || || | |||| ||| | || ||||| ||| || |||||||| || | Sbjct 60980 GGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAG 60922 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACG 29095 | || || || | || || ||| || | |||||| |||||||||||||||| || | Sbjct 60921 TTGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATG 60862 Query 29096 CGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATA 29155 ||||| || ||||| ||||| || ||||||| |||||| || |||||||| || || | Sbjct 60861 GTATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACA 60802 Query 29156 ACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTAT 29215 |||| | |||||||| ||||| ||| | || |||||||| || || ||||| || ||| Sbjct 60801 ACATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTAT 60742 Query 29216 TTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACA 29275 | || ||||||||||| ||||| || || || | | ||||| || |||||| || Sbjct 60741 TCTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACG 60682 Query 29276 TCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCG 29335 || ||| | |||||||| ||||| ||||||||||| ||||| ||||||||||| | Sbjct 60681 AATCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTG 60622 Query 29336 CTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTC 29395 |||| ||||||||||| ||||| ||||||||||| ||||| || || || ||||| Sbjct 60621 CTCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCAT 60562 Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 ||||||||||| | ||||| ||||| || || || ||||||||| |||| || || ||| Sbjct 60561 TACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTT 60502 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA-ACAAT 29514 | || ||||| ||||| | || ||||| ||||| ||||| || || | || |||| Sbjct 60501 CAACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA- 60443 Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| || || |||||||||||| || | || || |||||| | || |||||||| Sbjct 60442 GGTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTA 60383 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| | |||||||| ||||| ||||||||| | ||| Sbjct 60382 ATGCATGAAAGAAATGCTCACAACTTTCCACTTGATTTAGCT 60341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664067344480