Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq880 623 3e-174 >seq880 Length=74269 Score = 623 bits (690), Expect = 3e-174 Identities = 744/1001 (74%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 18712 CCTTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTG 18770 |||| || ||| ||||||||| |||||||| || || || |||||| | || ||||| || Sbjct 61337 CCTTTGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTG 61278 Query 18771 GTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTT 18830 |||||| | | ||||| || ||| | | || |||| ||||| || || || Sbjct 61277 GTTTGGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATT 61218 Query 18831 CATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCT 18890 || ||||| ||||| || || || ||||| ||||| ||||||||| | || || | Sbjct 61217 TATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGT--TCATTA 61160 Query 18891 TTAT--GGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTA 18948 |||| || ||||||||||| || || || || ||||| | || || || || || Sbjct 61159 TTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTA 61100 Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 || ||||||||||| ||||||||| ||| | ||||| ||| | |||||||| || || Sbjct 61099 CATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCT 61040 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | |||| | || || | || ||| || | || || | | |||||||||| || |||||| Sbjct 61039 TACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGG 60980 Query 19069 GAACTTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGT 19127 ||| ||| || || | |||| ||||| || ||||| |||||| |||||||| || || Sbjct 60979 GAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGT 60921 Query 19128 TGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGC 19187 ||| ||||| | || || ||| | | || ||| | ||||||||||| || || | Sbjct 60920 TGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGG 60861 Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 |||||| || ||||| ||||| ||||||| ||||||||||||||| ||||| || || Sbjct 60860 TATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAA 60801 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||| | |||||||| ||||| ||| | ||||| |||||||| || || || ||| |||| Sbjct 60800 CATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATT 60741 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGT 19367 || ||||||||||| ||||| || || || | | ||||||||||||||| | | Sbjct 60740 CTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGA 60681 Query 19368 ATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGC 19427 ||| ||| | || ||||| ||||| ||||||||||| ||||| ||||| || ||||| Sbjct 60680 ATCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGC 60621 Query 19428 TCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCT 19487 |||||| || |||||||| | || ||||| ||||| || || ||||| ||||| | Sbjct 60620 TCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATT 60561 Query 19488 ACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAG 19547 ||| ||||| || ||||||||||| || ||||| |||||||| | || | || | Sbjct 60560 ACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTC 60501 Query 19548 CACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATG 19606 || |||||||| ||||| ||||| || ||||| ||||| || || | || |||| | Sbjct 60500 AACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA-G 60442 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 ||||||| || | ||||||||||| ||| | || ||||||||| | || |||| |||| Sbjct 60441 GTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAA 60382 Query 19667 TGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 |||| ||| | |||||||| ||||| ||||||||||| ||| Sbjct 60381 TGCATGAAAGAAATGCTCACAACTTTCCACTTGATTTAGCT 60341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141147324995040