Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq429 93.3 4e-14 seq221 87.8 2e-12 >seq429 Length=364352 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||||||| | |||||| |||| ||||||| ||||| ||||| || || || ||| Sbjct 147032 CGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTG 146973 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| |||||| | ||| || || | | || | | ||| ||||| || || || || Sbjct 146972 CGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCC 146913 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| ||| || || | | || | ||||| | | ||| ||||| | Sbjct 146912 TCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTACTTCCAGA 146853 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || ||||| ||||| | |||||||||||| Sbjct 146852 GTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq221 Length=83180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||| || | | ||||| || ||||| ||||| || || || Sbjct 43855 ACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGT 43914 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 |||| ||| || ||||| || || | |||| || | ||| ||||| || || || || Sbjct 43915 ACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCC 43974 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| |||||| || | | || | ||||| | | ||| || |||| Sbjct 43975 CTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAG 44034 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || |||||||| ||||| | ||||||||||||| Sbjct 44035 GGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605957276800