Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq232 172 8e-37 >seq232 Length=44964 Score = 172 bits (190), Expect = 8e-37 Identities = 355/523 (68%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 1455743 CGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGA 1455802 || || ||| ||||||| ||| || | || |||||||||||| || ||||| || Sbjct 11179 CGATTCGTCTTGTTCCCGATCAAGTATAATGAAATCTGGGAAATGTAC-AAGAAGGCAGA 11237 Query 1455803 GGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTC 1455862 ||| ||||| ||||| || || ||||| || || || | |||| ||||||| Sbjct 11238 GGCTTCCTTCTGGACAGCTGAAGAGGTTGATCTGGGAGGAGACATCAAGCACTGGGAAGG 11297 Query 1455863 GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCG 1455922 ||| ||| ||||| | ||||||||| || || || || || ||| || || | Sbjct 11298 ATTGAATGACAACGAGAGACATTTCATCTCTCATGTGCTTGCATTCTTT-GCTGCATCTG 11356 Query 1455923 ATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 |||||||||| ||||| ||| | || ||| |||| ||||| || | ||||||| Sbjct 11357 ATGGCATCGTAAATGAGAATTTGGGGGTACGATTTTTGAAGGAGGTGCAGATCCCAGAGG 11416 Query 1455983 CACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGC 1456042 | | ||||| || ||||| |||||||| || || || || || | || | Sbjct 11417 CCAGAGCTTTTTATGGATTCCAAATCGCCATTGAGAATATTCATAGCGAGATGTATAGTC 11476 Query 1456043 TCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCG 1456102 ||||| | || || ||| ||||||| || || || ||| || | || || | ||||||| Sbjct 11477 TCCTGCTTGAGACATACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATCG 11536 Query 1456103 ACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG 1456162 | || || || ||||| ||| ||||| || ||||| |||| ||||| ||| Sbjct 11537 AGACAGTACCAGTGGTGAAGAAGAAGGCAGATTGGGCCATGAGATGGAT------TGAGT 11590 Query 1456163 GCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCT 1456220 | ||| |||| || ||||| | || | || ||| |||| || || || || |||| Sbjct 11591 CCAGCGATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCT 11650 Query 1456221 CGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 | || ||||| ||||| | |||||||| ||||| || || Sbjct 11651 CCGGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCT 11693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177726322382560