Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq634 129 5e-25 seq354 98.7 9e-16 seq157 89.7 5e-13 >seq634 Length=251403 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || ||| ||||||||| ||||| ||||| || || || ||| | || ||| Sbjct 209629 ACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCC 209570 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | |||||| || || || ||||| |||||||| || | |||| | |||||||||| Sbjct 209569 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGA 209510 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | || | | ||||| || |||||||||| ||||| || || Sbjct 209509 ATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTC 209450 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||||||||| || ||||| Sbjct 209449 CCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || ||| |||||| || ||||||||||| ||||| || ||| | || || Sbjct 1953 CACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTC 2012 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || ||||| || | |||||||| || | |||| | ||||||||| Sbjct 2013 GAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 2072 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | || | | || || ||| || ||||| | |||||| || || Sbjct 2073 AATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTT 2132 Query 35707 ACCC 35710 ||| Sbjct 2133 GCCC 2136 >seq157 Length=134730 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 44166 GGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAA 44225 ||||||||||| || | |||| ||||||||| ||||||||| |||| ||| | ||| Sbjct 46217 GGTAAAATGCATGGATTCCTGCGCATGTATTGGGCCAAGAAGATTCTGGAATGGACAGAA 46158 Query 44226 GATGCGCAAACCGCGC--TCGTTCATGCCATCTATCTGAACGACAAGTA-CAGTTTGGAC 44282 | | || | | || | | ||| |||| |||||||||| | ||||| ||| Sbjct 46157 --TCCCCAGAGCAAGCAATAGACTATGGCATCAGGTTGAACGACAAATGGCAGTT-GGAT 46101 Query 44283 GGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAG 44341 || || || || || || || || || ||||||||||| ||||| |||| || ||| Sbjct 46100 GGGCGTGATCCAAATGGCTATGTGGGTATCATGTGGTCCATGTGCGGAATCCATGATCAG 46041 Query 44342 GGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTA 44389 || ||||| || |||||| | ||| || | || ||||||||||| Sbjct 46040 GGA-TGGCGCGAAAGACCCATTTTCGGGAAGATTCGTTACATGAACTA 45994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788641270400