Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq429 111 2e-19 seq354 105 7e-18 seq634 98.7 1e-15 >seq429 Length=364352 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||||| ||| || |||||||| ||||| || || | | |||| | || || | ||| Sbjct 147015 GTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTG 146956 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || |||||||| | ||||||||| || || || || ||||| || ||||| || Sbjct 146955 CTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTT 146896 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | || || || || || || || |||||||| ||||| || || Sbjct 146895 CGACTTGACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGT 146836 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||||||||| ||||| Sbjct 146835 CAGGGTTTTAACGAAAATCTGCAT 146812 >seq354 Length=2136 Score = 105 bits (116), Expect = 7e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | || | ||| | ||| | || || ||||| || |||||||| || || Sbjct 1935 TCCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGC 1994 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||||| || | || |||||||| ||||| ||||| || | |||||||||||| || | Sbjct 1995 CAACG-TGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGG 2053 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || ||||| || ||||| || | ||| || ||||| || | Sbjct 2054 GAATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTA 2113 Query 134665 CGTCGAGAGTAATGGTTTTACC 134686 | || || || ||||| || || Sbjct 2114 CCTCAAGCGTGATGGTCTTGCC 2135 >seq634 Length=251403 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | || | || | || | || || |||||||| ||||| || || Sbjct 209649 TTCCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTG 209590 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| | || || | ||| || || || |||||||||||||||||||| || | Sbjct 209589 CTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTG 209530 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || ||||| || ||||| || | ||||| || || |||| Sbjct 209529 GAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCA 209470 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | ||||| || || |||||||| Sbjct 209469 CCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392840617600