Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq880 780 0.0 seq152 84.2 3e-11 >seq880 Length=74269 Score = 780 bits (864), Expect = 0.0 Identities = 778/1006 (77%), Gaps = 2/1006 (0%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || ||||||||||| || | |||||||| || | |||||||| |||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||||| | | ||||||||| | || |||||| |||| || |||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || || || || ||||| || || ||| |||||||| | | || |||||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 ||||||||| ||||| |||||||| | ||||||||| || ||| | || |||||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||| || ||| | || |||||| | || ||||||||||||| |||| | || || Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 || || ||| | | || | | | | || ||||| |||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 |||||||||||| ||||||||| ||| || || || || ||||| |||||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 |||||| | | || || ||||||||||||||||||| |||| |||||| | ||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 ||| ||||| || |||| |||||||||||||||||| || ||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 ||||||||| | ||||||||||| ||||| ||||| || | ||||| |||||||| || Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158334 || || ||||| ||| | | |||||||| ||||||| || ||| ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 158335 TTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGG 158394 ||| || || |||||||||||||| || ||||||||||| || || ||||| ||||| || Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 158395 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158454 |||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 158455 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 158514 ||| ||||| || || || || |||||||| || | || | ||||| |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 158515 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158574 | | || ||||||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 158575 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158634 ||||| ||| | | ||||| ||| | ||||| ||||| |||||||| | || || Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 158635 ACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCTGTA 158680 |||||||| ||||| ||| | |||| | ||| || || ||||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTGTAGTTGAAGCTCCAGCTGTA 60320 Score = 551 bits (610), Expect = 6e-152 Identities = 725/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 159450 |||||||||||| || ||||| || || ||||| ||||||||||| | || | | Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 159451 CCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGG 159510 || ||||||| | || | || || ||| | ||||| | || ||| | || ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 159511 TACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTC 159570 || || || ||| | ||| ||| | | |||||| |||||| | || || || || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 159571 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 159630 || || ||||| || |||||||||||| | | || | ||||| || || | ||| Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 159631 GGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGT 159690 |||||||| || ||||| ||| | || || | ||| | |||||||| | || ||| Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 159691 GCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTATC 159750 |||| ||| | || ||||||||| |||| |||||||| ||||| ||| ||| || Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 159751 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTT 159810 ||||| || || || || || ||||| | || ||||| ||||| || || ||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 159811 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 159870 |||||||| | ||||| ||| |||||||||||||| ||||| || || || |||||| Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 159871 TTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930 || |||| | | ||| | || |||||||| |||||||| | ||||| ||||||||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990 ||||| || |||||| | |||||| ||| | | ||||| ||||||||||| |||||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACT 160050 || |||||||| ||||||||||| || ||||| ||||| || ||| | || ||| Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 160051 CAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160110 |||| ||||| || ||||| ||||| ||||| || || |||||||| || || || ||| Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 160111 GTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 160170 || |||||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 50235 GTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGT 50294 Query 160171 CTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTC 160230 |||||| | |||||| | | ||| | ||||| ||| | ||||| || ||||| Sbjct 50295 TTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATTTT 50354 Query 160231 GTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAA- 160289 || ||| || ||| | || || |||||||||||||| || || ||||| || || || Sbjct 50355 GTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAAT 50414 Query 160290 CATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAA 160349 ||| |||| ||||||| |||| ||||||||||| || ||||| || |||||||| Sbjct 50415 CAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAA 50473 Query 160350 CTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || | ||||| ||||| ||| |||| | || ||||| || Sbjct 50474 ATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 >seq152 Length=72664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 158868 GCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAA 158927 |||||| |||| | || || || |||||||| ||||| |||||||| || || ||| Sbjct 24938 GCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGG-AAA 24996 Query 158928 CTTGTCAGC-GGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGC 158986 | || |||||||||||||| ||| ||||| ||||||||||| || ||||| || Sbjct 24997 GGTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGC 25056 Query 158987 AGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGATTG 159031 | |||||| | || || || || | || || || || || || Sbjct 25057 CAATGGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGACTG 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573017696736000