Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq880 767 0.0 seq152 91.5 2e-13 >seq880 Length=74269 Score = 767 bits (850), Expect = 0.0 Identities = 764/987 (77%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || ||||| || | ||||| | | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || ||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||||||||| ||||| ||||||||| |||| ||||| |||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 |||||||||| || || | ||||||||| | || ||||||||||||| |||| | || | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 ||| ||| ||| | | || | | | | || ||||| |||||||||||| | || | || Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 ||||||||||||| || |||||| ||| || || || || ||||| |||||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||||||| || | || || ||||||||||||||||||| |||| |||||| | |||| Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 |||| ||||| || |||| |||||||||||||||||| || ||||| ||| | ||||| | Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | ||||| ||| | || |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | || || ||||| ||| | | |||||||| ||||||| || ||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| || || |||||||| ||||| || ||||||||||| || || ||||||||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 ||||||| ||||||||||| || ||||| |||||||| |||||| | ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||| ||||| || || |||||||||||| | ||| || || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 || | || ||||||||||||||||| || | | ||| |||||||||||| | |||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| || | | || |||||| | ||||| ||||| |||||||| | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 160918 CACACAACTTCCCACTCGACCTCGCTG 160944 | |||||||| ||||| || | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 399 bits (442), Expect = 2e-106 Identities = 708/1022 (69%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 || ||||| | || ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 161748 CTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTT 161806 || || || || || ||||||| | || | || || ||| | ||||| | || || Sbjct 49563 -TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATT 49621 Query 161807 CGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 161866 | || |||||||| |||||| | ||| ||| | | | || ||| || ||||| Sbjct 49622 TGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCT 49680 Query 161867 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 161924 || |||| ||||| || || || | |||||||||||| || || || | ||| Sbjct 49681 TAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTC-ATTATTATTATTATGG 49739 Query 161925 GGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTT 161984 || || || || ||||| || || || ||| ||| | || || | |||| |||| Sbjct 49740 GGCCCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 49799 Query 161985 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 162044 || ||| | |||||| | || || ||||||| || ||| | ||||| ||||| | ||| Sbjct 49800 GTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCA 49859 Query 162045 CGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 ||| | || ||||| || || || || || ||||| | || ||||| ||||| Sbjct 49860 CGTTCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTC 49919 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || || ||| | ||||| || || ||||| || | ||||| || || || ||| Sbjct 49920 GTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTT 49979 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTG 162224 || || || |||||||| |||| | | || | ||||| |||||||||||||| | Sbjct 49980 GGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTA 50039 Query 162225 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATT 162284 ||||| |||||||||||||| || |||||| | |||||| ||| | |||| |||||| Sbjct 50040 AACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATC 50099 Query 162285 CACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 162344 || || | || || ||||| ||||||| || ||||| || ||||| || || Sbjct 50100 CATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 50159 Query 162345 GCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 || ||| | | || || | ||||| || ||||| ||||| ||||| || || |||||| Sbjct 50160 GCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGG 50219 Query 162405 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 162464 || || || || ||| | || ||||| || || || ||| | ||||| || ||||| ||| Sbjct 50220 TCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTT 50279 Query 162465 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 162524 || || || | ||| |||||| | |||||| | | ||| | ||| | ||| | Sbjct 50280 GTACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTA 50339 Query 162525 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACG 162584 ||||| || ||||| || ||| || || | || || ||||||||||| || ||||| Sbjct 50340 CGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACT 50399 Query 162585 TTCTACACTAAGAA-CATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 162643 ||||| || || || |||| | | ||||||| | || || ||| | || || || Sbjct 50400 TTCTATACAAAAAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGA 50458 Query 162644 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 162703 || || ||||| || || | |||||||| || || | || | || ||||| ||||| Sbjct 50459 TCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTA 50518 Query 162704 AT 162705 || Sbjct 50519 AT 50520 >seq152 Length=72664 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 161150 GCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAA 161209 |||||| |||| | || ||||| |||||||| || ||||||||||| ||||| || Sbjct 24938 GCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGGAAAG 24997 Query 161210 ATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAA 161269 | | || || || |||||||| |||||||| ||||||||||| |||||||| | Sbjct 24998 GTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGCC 25057 Query 161270 TCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 |||||| | | || || ||||| || || || Sbjct 25058 AATGGATTTGTGCTCACCTGCGTTGCCTACCCAAC 25092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559497845456000