Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq880 767 0.0 >seq880 Length=74269 Score = 767 bits (850), Expect = 0.0 Identities = 768/994 (77%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| || ||||| || | ||||||| | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || ||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 |||||||||| ||||| ||||||||| |||| ||||| |||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 |||||||||| || || | ||||||||| | || ||||||||||||| |||| | || | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | ||| ||| | | || | | | | |||||||| ||||| |||||| | |||| || Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | ||||||||||| || |||||| |||||| ||||| || ||||| || ||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 |||||||| | | || || |||||||||||||||||||||| | |||||| | || | Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||| ||||||||||||| ||||||||| |||||||| ||||||||||| | ||||| | Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | ||||| ||||| ||||| || |||||||||||||||||| | ||| || ||||||| Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638 |||| | || || |||||| | ||||||| || ||||||| || ||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698 ||||||| || || ||||||||||| || ||||||||||| || || || |||||||||| Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 |||| || ||||||||||| |||||||| |||||||| |||||| | ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818 | || ||||| |||||||| || |||||||| || | || | || |||||||||| Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878 || | ||||| |||||||||||||| || | | || |||||| ||||| |||||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938 | ||||| || | | |||||||| | || || ||||| ||||| || | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 181939 CGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 181972 | |||||||| || |||||| | || | || ||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTGTAGTTGA 60333 Score = 435 bits (482), Expect = 4e-117 Identities = 707/1006 (70%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 182373 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 182432 || |||||| || || ||||| || || ||||| ||||||||||| | || | | Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 182433 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 182492 || ||||||| | || | || || ||| | ||||| | | |||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 182493 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGT 182551 || || || ||| | |||||||| | | | |||||| ||| ||||||| | || || || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAGT 49693 Query 182552 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 182611 || || ||||| || |||||||||||| | | || | ||||| || || | || Sbjct 49694 TTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACA 49753 Query 182612 GGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 || || ||| | || ||||| ||| | || || | |||| ||| || || | || | Sbjct 49754 AGGCGACTTTACT-CGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATG 49812 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAA 182730 || | || ||| | |||||||| ||| | | |||||||| |||| || | || Sbjct 49813 GTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAA 49872 Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790 | | || || || || || ||||| || | || ||||| || ||||| || ||| Sbjct 49873 TTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCT 49932 Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850 | ||||||||||| || || || ||||| || || || |||||||| || || | Sbjct 49933 TAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAA 49992 Query 182851 TCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATA 182910 ||||| | || | | ||| | || |||||||| |||||||| | ||||| ||||||| Sbjct 49993 TCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATA 50052 Query 182911 TGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAG 182970 ||||||| || |||||| | | |||| ||| | || ||||||||||||||| || | Sbjct 50053 TGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTG 50112 Query 182971 TAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCA 183030 |||| || || || | ||||||||| || ||||| ||||| || || | | | Sbjct 50113 TAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAA 50172 Query 183031 CTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCG 183090 |||| | || || || ||||| ||||| || ||||||||||| ||||||||||| || | Sbjct 50173 CTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTG 50232 Query 183091 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183150 | || || ||| ||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 50233 GTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 50292 Query 183151 GTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGAT 183209 || | ||| | | | ||||| | | || | ||| |||| ||| ||||| |||||| Sbjct 50293 GTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGCATATGAT 50351 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 ||||| |||||| ||| | || || ||||||||||| ||||| || ||||| ||||| Sbjct 50352 TTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAA 50411 Query 183270 AA-CATCCTTCTCA-ATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATG 183327 || ||| || | | ||||||| | || |||||| |||| || ||||| || |||| Sbjct 50412 AATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATG 50469 Query 183328 AAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||| || | ||||| || || || |||| | || ||||| || Sbjct 50470 AAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614610839206400