Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq880 823 0.0 seq814 132 7e-26 >seq880 Length=74269 Score = 823 bits (912), Expect = 0.0 Identities = 783/1001 (78%), Gaps = 0/1001 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||||| || || | || ||| | ||| |||||||||| Sbjct 61333 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 61274 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 ||||| ||||||| ||||| | ||| | |||||| | ||||| ||||| || | Sbjct 61273 GGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATC 61214 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | |||||| ||||| || ||||| || |||||||| || || |||||||| | | || Sbjct 61213 GCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATAC 61154 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 || |||||||||||||| ||||| |||||||| | ||||||||| || ||| |||| ||| Sbjct 61153 GGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTC 61094 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 ||||||||||||||||| || | | || || ||| | |||||||||||||||| |||| Sbjct 61093 TACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAA 61034 Query 174759 CTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTC 174818 ||||||| | || ||| | | ||| | | | || ||||| |||||||||||| | Sbjct 61033 TTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTA 60974 Query 174819 TCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCA 174878 |||| |||||||||||| | || |||||| ||| || ||||| ||||||||||| ||| Sbjct 60973 TCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCA 60914 Query 174879 GCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCC 174938 ||| |||| |||||| | | || || ||||||||||||| ||||| || | ||||| Sbjct 60913 GCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCA 60854 Query 174939 TTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTG 174998 || |||||||| || |||||||||| |||| | || |||||||| || || |||||||| Sbjct 60853 TTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTA 60794 Query 174999 ATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCG 175058 |||||||| ||||| ||||| || || || ||||| || ||||||||||| |||||||| Sbjct 60793 ATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 60734 Query 175059 ATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAG 175118 ||||| ||||||||||| || |||||| | ||||||| || ||||||| || ||| Sbjct 60733 ATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCT 60674 Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178 ||| | |||||||| || || ||||||||||| || || |||||||| || || ||||| Sbjct 60673 AACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGT 60614 Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 ||||| |||||||| |||||||||||||||||||| |||||||| || ||| | |||||| Sbjct 60613 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTC 60554 Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298 |||||||| || |||||||| || ||||| |||||||| || | ||| |||| || ||| Sbjct 60553 TTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATG 60494 Query 175299 GCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTA 175358 ||||| ||| | |||||||||||||||||||| || ||| | || ||||||| | ||| Sbjct 60493 GCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTA 60434 Query 175359 TTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAG 175418 | ||||| ||||| ||| || ||||| | ||| | || || |||||||||||||| Sbjct 60433 ATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAA 60374 Query 175419 AGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGA 175459 |||||||| |||||||| ||||| ||||| || | || ||| Sbjct 60373 AGAAATGCTCACAACTTTCCACTTGATTTAGCTGTAGTTGA 60333 Score = 444 bits (492), Expect = 9e-120 Identities = 719/1018 (71%), Gaps = 22/1018 (2%) Strand=Plus/Plus Query 175854 GATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTA 175913 || ||| | || |||||||||| | ||| | || | ||| | || |||||||| ||| Sbjct 49506 GACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTA 49565 Query 175914 CTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTC 175973 || | | || ||||||| | || | || |||||| | ||||| | || ||||| Sbjct 49566 TTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTT 49625 Query 175974 ACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACA 176033 || ||||| || |||||| | |||||||| | | | || ||| ||| || | ||| Sbjct 49626 ACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACA 49685 Query 176034 GCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCT 176093 || || || || || ||||| || |||||||||||| | | || | ||||| || Sbjct 49686 GCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCA 49745 Query 176094 GAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCT 176153 ||| | || |||||||| || ||| ||| | || || | ||| | |||||||| Sbjct 49746 GAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCA 49805 Query 176154 CTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTC 176213 | || ||| | || ||| | ||||| || ||| | ||||| ||||| | ||| | || Sbjct 49806 TTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT-TC 49864 Query 176214 ATTGGTA-TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGT--C 176270 | | | | ||||| || ||||| || || ||| | || || || || || || | Sbjct 49865 AGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATC 49924 Query 176271 AGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGT 176330 ||| | || ||||| || ||||||||||| |||||||||||| || |||||| Sbjct 49925 AGTTTTCTTAATCTAT--CCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGT 49982 Query 176331 GTGGCAGCAATCTTTAGATTCCTATTGT-TTCTT-CAGGGTTTCCACAACTGGACACTGA 176388 || || |||||||| |||| ||| | ||||| || |||||||| |||||||| | | Sbjct 49983 GTTGCCGCAATCTTCCGATT--TATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAA 50040 Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCC 176448 |||| |||||||||||||| || |||||| | |||||| ||| |||||| ||| |||| Sbjct 50041 ACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCC 50100 Query 176449 ATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTG 176508 |||| | ||||| ||||| || ||| ||||||||| || || || ||| || Sbjct 50101 ATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 50160 Query 176509 CGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGT 176568 | || | | || || | ||||| || ||||| ||||| |||||||| || ||||||| Sbjct 50161 CATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGT 50220 Query 176569 CGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTG 176628 | ||||| || || || || ||| ||||| |||||| | || ||||||||||| |||| Sbjct 50221 CACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTG 50280 Query 176629 TCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATTGGGCTTGCTCTTAATC 176685 | || || | ||| | ||| | ||| |||||| | | || | ||| |||| | Sbjct 50281 TACCAGTAACTGGTTTATGGAT---GAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAAC 50336 Query 176686 TT-CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAA 176744 || ||||| ||||||||||| ||||| ||| | || || ||||||||||| || ||| Sbjct 50337 TTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAA 50396 Query 176745 ACTTTCTACACAAAGAA-CATCCTTCTTA-ACGAAGGACTAAGAGCATGGATGGCACCTG 176802 |||||||| ||||| || ||| || ||| | ||||| | |||| |||||||| || Sbjct 50397 ACTTTCTATACAAAAAATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTC 50454 Query 176803 TGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||| ||| ||||||||||| || || |||| | || ||||| Sbjct 50455 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGC 50512 >seq814 Length=161544 Score = 132 bits (146), Expect = 7e-26 Identities = 348/526 (66%), Gaps = 4/526 (1%) Strand=Plus/Minus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || || ||||| |||||| | || || |||||||||||| || || ||| || || Sbjct 132775 CCAGACGAGATTTACAACTTGGGTGCCCAGAGTCATGTGGGGGTGTCCTTCCAGTGCCCA 132716 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287 || ||||| || | |||||||| || | ||||| |||||||| | | | Sbjct 132715 GAGTATACTGCTGATGTCGATGCTCTTGGGGTGTTGAGAGTGTTGGAGGCCATCAGAATT 132656 Query 161288 CTAGGTATG-ACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 | |||||| | | || | || | || ||||| |||||| |||| ||| ||| Sbjct 132655 TTGGGTATGGAGAAGAAGTGCAAGTTT-TATCAGGCTTCCACCTCTGAGCTGTTTGGAAA 132597 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| || |||| || || || | || ||||||||||| ||||| || ||||||| | Sbjct 132596 GGTGCAGGAGATTCCCCAAAAGGTGACCACACCTTTCTATCCACGTTCGCCATATGCGGC 132537 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 ||| || || | || || ||||| ||||| |||||| || || ||| || Sbjct 132536 AGCAAAGCTGTTCGGGTACTGGATCACCGTCAACTATAGAGAGTCGTACGGTATGTTTGC 132477 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 | | | |||||| || |||||||| ||||| || | | |||||||| || || || | Sbjct 132476 CTGCAATGGTATCCTGTTCAACCACGAGTCCCCTCTGAGAGGTGAGACATTTGTGACAAG 132417 Query 161527 TAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGG 161586 ||||| || | || || | | || | | || | | ||| || ||| | || Sbjct 132416 GAAGATCACACGAGGTCTGGCAAGGATCAAGGCTGGTTTGGATGATGCACTGTACTTGGG 132357 Query 161587 TAATCTAAACTC-AAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGT 161645 ||||| | | |||| |||||||||| ||||| | || || || ||| |||| Sbjct 132356 AAATCTCGATGCGAAGA-GAGATTGGGGGCATGCGAAGGATTACGTCGAGATGCAGTGGC 132298 Query 161646 TGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 ||||| | || ||||| || | || ||||||||||| || || Sbjct 132297 TGATGCTCCAGCAGGATGAACCAAAGGATTATGTGATTGCAACTGG 132252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729921570774400