Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq880 764 0.0 >seq880 Length=74269 Score = 764 bits (846), Expect = 0.0 Identities = 763/987 (77%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| || ||||| || | ||||| | | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || || ||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 |||||||||| ||||| ||||| ||| |||| ||||| |||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 |||||||||| || || | ||||||||| | || ||||||||||||| |||| | || | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | | ||| ||| | | || | | | | || ||||| ||||| |||||| | || | || Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796 | ||||||||||| || |||||| ||| || || || |||||||| |||||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856 |||||||| || | || || ||||||||||||||||||| |||| |||||| | |||| Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158916 |||| ||||| || |||| |||||||||||||||||| || ||||||||| | ||||||| Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 158917 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158976 | ||||||||| | ||||||||||| ||||| ||||| || | ||||| |||||||| | Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 158977 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || ||||| ||| | | |||||||| ||||||| || ||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 ||||||| || || |||||||||||||| || || ||||| || || ||||||||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 ||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| ||||| || || || || |||||||| || | || | ||||| |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | |||||||| | ||||| ||||| |||||||| | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 159337 CACACAACTTCCCACTCGACCTTGCTG 159363 | |||||||| ||||| || | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 396 bits (438), Expect = 3e-105 Identities = 714/1026 (70%), Gaps = 16/1026 (2%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 || ||||| | || ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 159959 CTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTT 160017 || || || || || ||||||| | || | || || ||| | ||||||| || || Sbjct 49563 -TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATT 49621 Query 160018 CGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 160077 | || |||||||| ||||| | ||| ||| | | | || ||| || ||||| Sbjct 49622 TGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCT 49680 Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 160135 || |||| ||||| || || || | |||||||||||| || || || | ||| Sbjct 49681 TAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTC-ATTATTATTATTATGG 49739 Query 160136 GGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 160194 || || || || ||||| || ||| || | ||| ||| | || || | |||| ||| Sbjct 49740 GGCCCAGAAGCACAAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTT 49798 Query 160195 TGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC 160254 ||| ||| | |||||| | || || ||||||| || ||| | ||||| ||||| | || Sbjct 49799 TGTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGC 49858 Query 160255 ACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCT 160313 |||| ||| | || ||||| || || || || || ||||| | || ||||| || | Sbjct 49859 ACGT-TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTT 49917 Query 160314 TTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373 | || || ||| | ||||| || || ||||| || | ||||| || || || | Sbjct 49918 TCGTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTT 49977 Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433 |||| || || |||||||| |||| | | ||| | ||||| || || |||||||| Sbjct 49978 TTGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTT 50037 Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493 | ||||| |||||||||||||| || |||||| | |||| | ||| | || |||| | Sbjct 50038 TAAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTA 50097 Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553 ||||||| | |||||||| |||||| | | ||||||||| || |||||||| || Sbjct 50098 TCCATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCC 50157 Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613 || ||| | | || || | ||||| || ||||| ||||| ||||| || || |||| Sbjct 50158 GTGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCT 50217 Query 160614 GGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160673 |||| || || || ||| | || ||||| || || || ||| | ||||| || ||||| | Sbjct 50218 GGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTAT 50277 Query 160674 TTGTGCCTGTTATGGGTCTTTGGA--CATCCAGTATTGGCATTATTGGTCTTGCTCTCAA 160731 |||| || || | ||| | |||| | || |||||| | | ||| | ||| | || Sbjct 50278 TTGTACCAGTAACTGGTTTATGGATGAGTGCA--ATTGGCGTAGTAGGTTTAGCTTTAAA 50335 Query 160732 TCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGA 160791 | ||||| || ||||| || |||||| ||| | || || |||||||| ||||| || Sbjct 50336 CTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGA 50395 Query 160792 GACCTTCTACACCAAGAA-CATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTG 160850 || ||||| || || || ||| || | ||||||| | || || ||| | || || Sbjct 50396 AACTTTCTATACAAAAAATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTC 50454 Query 160851 CCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCC 160910 || || || ||||| || || | |||||||| || || | || | || ||||| | Sbjct 50455 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTC 50514 Query 160911 TTTAAT 160916 |||||| Sbjct 50515 TTTAAT 50520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552467522790400