Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq880 755 0.0 >seq880 Length=74269 Score = 755 bits (836), Expect = 0.0 Identities = 775/1008 (77%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 || || ||||||||||| ||| | || ||||| || | |||||||| ||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| | | ||||||||| | || |||||| | || || | || || || Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || ||||| || || |||||||| || || |||||||| | | || || ||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 ||||||||| ||||| ||||| |||| ||||||||| |||||| |||| |||||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | || ||| | | || | | | | || ||||| |||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | |||||||||||||||||||| |||||| ||||| |||||||| ||||| || | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 |||||| || | || || |||||||||||||||||||||||| |||||| | ||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||| ||||| || |||| |||||||||||||||||| || ||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 ||||||||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 || || ||||| || | | |||||||| ||||| | || ||| ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || || || ||||||||||| || || |||||||| || || ||||| ||||| || Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 |||||| ||||||||||| || || ||||||||||| || || || ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 ||| ||||| || || || || |||||||||||| | || | ||||| ||||| || || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 | | || ||||||||||||||||| || | | || ||||| ||||| | ||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 179760 ATGGGCGGACGTATTG--AACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAAC 179817 ||||| || ||||| |||||||| || ||||| ||||| |||||||| | || Sbjct 60425 TTGGGCTGA--TATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAAT 60368 Query 179818 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCTGTA 179865 || |||||||| ||||| || | |||| | ||| || || ||||| Sbjct 60367 GCTCACAACTTTCCACTTGATTTAGCTGTAGTTGAAGCTCCAGCTGTA 60320 Score = 432 bits (478), Expect = 4e-116 Identities = 701/1001 (70%), Gaps = 6/1001 (1%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || ||||||||| || || || || |||||||| || |||||||| || || | | Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 180093 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 180152 || ||||||| | || | || || ||| | ||||| | | ||||| || ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 180153 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGT 180211 || || || ||| | |||||||| | | | |||||| ||| ||||||| | || || || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAGT 49693 Query 180212 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC- 180270 || || ||||| | |||||||||||| | | || | ||||| || || | | Sbjct 49694 TTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACA 49753 Query 180271 AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 180330 ||| || ||| | || ||||| ||| | || || | |||| ||| || || | || | Sbjct 49754 AGGCGACTTTAC-TCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATG 49812 Query 180331 GTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTA 180390 || | || || ||||||| |||||| |||| || ||||| | |||||| | | Sbjct 49813 GTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAA 49872 Query 180391 TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTC 180450 | ||||| || || || || || ||||| | || || || || || || || || Sbjct 49873 TTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCT 49932 Query 180451 TCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAA 180510 | ||||| || | ||||| || | ||||||||||| || |||||| || || |||| Sbjct 49933 TAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAA 49992 Query 180511 TCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 180570 |||| |||| | || || | || |||||||| |||||||| | ||||| ||||||| Sbjct 49993 TCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATA 50052 Query 180571 TGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTG 180630 ||||||| || |||||| | |||||| ||| || |||| || |||||||| | ||||| Sbjct 50053 TGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTG 50112 Query 180631 TGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAA 180690 | || |||||| | | ||||||||| || ||||| || || |||||| | ||| Sbjct 50113 TAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAA 50172 Query 180691 CGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 180750 | |||| || ||||| || || ||||| ||||| || || |||||||| || || || | Sbjct 50173 CTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTG 50232 Query 180751 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180810 || | |||||||| || || || ||| | ||||| || ||||| ||||| || || | | Sbjct 50233 GTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 50292 Query 180811 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180870 || |||||| | |||||| | | ||| | ||| | ||| | ||||| || |||| Sbjct 50293 GTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATT 50352 Query 180871 TCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGA 180930 | || |||||| || | || || ||||||||||| ||||| || ||||| || || | Sbjct 50353 TTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAA 50412 Query 180931 A-CATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAA 180989 | ||| |||| ||||||| | || || ||| |||| || ||||| || || ||| Sbjct 50413 ATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAA 50471 Query 180990 AACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || || | ||||| || || || ||||| | || ||||| Sbjct 50472 AAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGC 50512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610322886374400