Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq232 215 7e-51 seq457 201 2e-46 >seq232 Length=44964 Score = 215 bits (238), Expect = 7e-51 Identities = 393/574 (68%), Gaps = 6/574 (1%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 || || |||||||| | | || || ||||| || ||||| | ||| || | || || Sbjct 11747 TGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAATCCTGGAAGCAGCCCT 11688 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 |||||||||||||| | |||||| || ||||| || ||||| || ||||| || Sbjct 11687 CGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAATTCCTTCAACGCAG 11628 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TGTATCCACTTCTGTGCC 39808 || |||||||| | || |||| || || | ||| | | ||||| || ||| Sbjct 11627 GCGAATGCAACCAATCGCTCTGCGAAA---GAATCGCTGGACTCAATCCATCTCATGGCC 11571 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTT 39868 ||||| || |||||||| || || | ||| || || |||| || || | | ||| Sbjct 11570 CAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGAACAGCTTGTTCTTT 11511 Query 39869 TCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTT 39928 ||| || ||| || | ||||| || | | ||||||||||| || ||| || || Sbjct 11510 TCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCTCGCTATGAATATTC 11451 Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || || || ||||| |||||| ||| || || | || || ||||| || Sbjct 11450 TCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCTGCACCTCCTTCAAA 11391 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 |||| | || ||||||| ||||| || || |||||| || ||||| ||||| | ||| Sbjct 11390 AATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAATGCAAGCACA 11331 Query 40049 TGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGAT 40108 || || |||| | | || | | ||||| | ||||| ||||| ||| | Sbjct 11330 TGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGCTTGATGTCTCCTCCC 11271 Query 40109 ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATA 40168 | ||| || |||||||||||||| || || ||||||||||| |||||||| | ||| || Sbjct 11270 AGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATTTCCCAGATT 11211 Query 40169 TCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 ||| ||| | || || || | || |||| || Sbjct 11210 TCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 201 bits (222), Expect = 2e-46 Identities = 466/700 (67%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 |||||||| ||||| ||| |||| |||||||| || | | ||||| Sbjct 208715 TTCATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGC 208774 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATC 69614 |||||||||||| | ||| |||||| | | || | | ||| | || |||||| ||||| Sbjct 208775 TTCATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATC 208834 Query 69615 GGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 || ||||| | | | || || | |||||| | || |||||| || || ||| | Sbjct 208835 TGGGATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCT 208893 Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733 | | | || || | || | |||||||| ||||| || || | || || || | Sbjct 208894 TCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACG 208953 Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793 |||| || || ||||||||||| | |||||||| |||| ||| | || | | Sbjct 208954 CTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGA 209013 Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853 |||| || | ||||||||| || | |||||||||||| ||||||| || | || | Sbjct 209014 GCATAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTC 209073 Query 69854 GAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913 |||||| ||||| ||||| || || ||||| | || ||||| |||||| | Sbjct 209074 TGATATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCT 209133 Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG 69973 ||| |||||||| || || || || ||||||| ||||| | | ||| || || Sbjct 209134 TCAGAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAG 209193 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 | | ||| | || ||| || ||||| || | || ||||| || || ||||||||| Sbjct 209194 AAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATC 209253 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 | | ||| ||||| | |||||| ||||| |||| || |||| | || || ||||| | Sbjct 209254 TCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTGTGGATTCCAA 209313 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 | || | ||| | ||| ||||| || | || || | ||| | | | || Sbjct 209314 CTGAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCA 209373 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 ||||| ||||||||||| || |||||||| | ||| Sbjct 209374 AATATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTA 209413 Score = 100 bits (110), Expect = 4e-16 Identities = 350/541 (65%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| ||| ||| | ||||||||||||| || | || || ||||| || | Sbjct 80584 CATGCGAAATCAGTATGCAAGCCCTCATCTCTAGAGATGAGCTCATTCGAAAACGTCAAC 80525 Query 39677 CCAGGCATTAGACCA-CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| | || | | ||| || | |||| | || | | ||||| || |||||| Sbjct 80524 CCTGGCATCA-ACAATCTCTTCTTCAACCAATAAATAGAACAGAAAGACCCCGAAAAGTG 80466 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TGTA 39794 || ||||| || |||||| || || | | || | ||| | | || | || | Sbjct 80465 AATCCCTTCCACACATGCAAACGCCACCAACCGTTCAGCAAAACACAT-TGATGACTGAA 80407 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| || ||||| |||| |||||| |||||||||| || || | ||| ||| Sbjct 80406 TCCATTTGATCGCCCACGCAGCCTTCTTCCGCACACAAGGCACCGTCTCCACAGCCCTAA 80347 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | | || || | | |||| | || ||| || | |||| | |||||||| Sbjct 80346 ACAAATGATCCCGCTGCTTTTTATCATCAATATACTGCTCCAACAACAACCCATACATTT 80287 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | || | || || |||||| |||||| || ||||| | |||||||| ||| | Sbjct 80286 CACTGTGCACATTCTCTATCGCCGACTGAAACCCATAAAAGGCCCGTGCTTCAGGAATCT 80227 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | | |||| ||| || |||||| ||| || ||| || ||||| || |||| Sbjct 80226 GAATCTCTTGCATAAACCTCACCGCCAGATTCTCCAACACAATACCATCCGATGCCGCAA 80167 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 |||||||||| |||| ||||||| | || || | |||| || ||| || Sbjct 80166 AAAATGCCAACACATAACTAATAAAGTGCTTCTCCGCATCATTCAAACGATCCCAATCCC 80107 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 |||||| ||| | ||| || || || | ||||| | |||| |||| |||||| Sbjct 80106 GCTTATCTTGTGACAAATCCACCTCCTCCACAGTCCAGTAACTGGCCTGTGCCATTTTGT 80047 Query 40155 A 40155 | Sbjct 80046 A 80046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901244003200