Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq457 105 5e-18 >seq457 Length=513114 Score = 105 bits (116), Expect = 5e-18 Identities = 297/454 (65%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || || || ||||| || || ||||| |||||||| || || || || || Sbjct 80133 GAGAAGCACTTTATTAGTTATGTGTTGGCATTTTTTGCGGCATCGGATGGTATTGTGTTG 80192 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| ||| ||||| |||||| |||| | || |||||||| |||||| Sbjct 80193 GAGAATCTGGCGGTGAGGTTTATGCAAGAGATTCAGATTCCTGAAGCACGGGCCTTTTAT 80252 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 |||||||| || ||||| ||| | || |||||||| | | || | || | Sbjct 80253 GGGTTTCAGTCGGCGATAGAGAATGTGCACAGTGAAATGTATGGGTTGTTGTTGGAGCAG 80312 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCG 44068 || || | ||| | || | ||| ||||||| || | || || || ||| Sbjct 80313 TATATTGATGATAAAAAGCAGCGGGATCATTTGTTTAGGGCTGTGGAGACGGTGCCTTGT 80372 Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA--AATGATTCTTTTGGAG 44126 | | || || | ||||| | |||||||| | ||| |||| | ||||| | Sbjct 80373 GTGCGGAAGAAGGCTGCGTGGGCGATCAAATGGATTCAGTCATCAATG--TGTTTTGCTG 80430 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 |||| | || ||||||||| ||||||||| ||| |||||| || || || | | Sbjct 80431 AACGGTTGGTGGCGTTTGCATGTGTGGAAGGGATTCACTTTTCGGGGTCTTTCTGTTCTA 80490 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | | |||||| ||||| || |||||||| |||||||||||||| |||||| | || Sbjct 80491 TTTATTGGTTGAAGAAGAGATTGTTGATGCCAGGGTTGACGTTTTCGAATGAGCTCATCT 80550 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | | ||||| ||||| ||| ||||| || || Sbjct 80551 CTAGAGATGAGGGCTTGCATACTGATTTCGCATG 80584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451737284400