Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq634 109 5e-19 seq429 102 7e-17 seq221 84.2 2e-11 >seq634 Length=251403 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 27013 AATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 ||| ||| ||||| | ||| || | |||||||| || ||||| || ||||| || || | Sbjct 209654 AATGATT-CCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTAT 209596 Query 27073 AGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 | || ||| |||| |||| | ||||| | ||| || || ||| |||| | |||||| ||| Sbjct 209595 AATCTGCTAATGT-GCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGA 209537 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | ||||| || || ||||| || | |||| | |||||| | Sbjct 209536 TCAGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAA 209477 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || | || || || || |||||||||||||||||||| Sbjct 209476 GACTCCACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq429 Length=364352 Score = 102 bits (112), Expect = 7e-17 Identities = 169/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 27005 ACTTTCATAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTG 27064 ||||| || || || || || ||||| || | ||||| |||||||| || || ||||| Sbjct 147053 ACTTTAATCATCATCCCC-CCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTG 146995 Query 27065 AATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACG 27124 || || || || || | ||||| | ||||| | ||| || || ||| |||| | | Sbjct 146994 GATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCT 146935 Query 27125 CTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGT 27184 ||| ||||| || || | ||||||||||| ||||| || | | || | || Sbjct 146934 CTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGT 146875 Query 27185 GTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTG 27244 || | | || ||||| ||||| |||| ||| |||||||| ||||| || || || || Sbjct 146874 ATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTG 146815 Query 27245 CAT 27247 ||| Sbjct 146814 CAT 146812 >seq221 Length=83180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| |||||||| | ||||| || | ||||| || || ||||||||||| || || Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | ||| | || || ||||| || || ||| | || || | ||| ||||| ||||| Sbjct 43910 AATG-TACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGG 43968 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| || || || | | || | || |||| | || || Sbjct 43969 GATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGAC 44028 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | || || ||||| ||||| || || || ||||| Sbjct 44029 CTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929842578560