Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq232 118 1e-21 seq600 104 3e-17 seq3 96.9 4e-15 seq556 95.1 2e-14 seq457 82.4 1e-10 >seq232 Length=44964 Score = 118 bits (130), Expect = 1e-21 Identities = 200/287 (70%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||| |||||||| || || || | || || ||||| | ||| Sbjct 11759 GCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAATCCT 11700 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 || | || || ||||| || | ||| ||||| || ||||| || ||||||||||| || Sbjct 11699 GGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAATT 11640 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA---GCGAGACTTTGCATCA 122835 || || || || || || |||| | || || ||||| || || ||| ||| Sbjct 11639 CCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGAC------TCA 11586 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTC 122894 | |||| |||| ||||| | ||||||||| ||| || |||||| || | |||||| | Sbjct 11585 ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCAC-TGGTACTGTCTCGATGGCATG 11527 Query 122895 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCA 122941 || | || ||||||||| |||||| |||||| | |||| || Sbjct 11526 GAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCA 11480 >seq600 Length=304360 Score = 104 bits (114), Expect = 3e-17 Identities = 248/371 (67%), Gaps = 3/371 (1%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| || ||||| | || ||||| || ||||| | ||| | |||||| | | || | Sbjct 66536 CTTGACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCG 66595 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATT 11564 |||| |||| || | ||| ||||| | | ||||| ||||||||||| || | | | Sbjct 66596 TGGCTGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCT 66655 Query 11565 GATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGC 11624 | || | |||||| ||||| || || ||| || | |||| | || || | | Sbjct 66656 GGTTCAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTAC 66715 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 | || |||||||||||||| || ||||| || || || ||| || ||| ||| | Sbjct 66716 CAACAGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGA 66775 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | ||||| | || | ||||| ||||| |||||||| || || || | | | | Sbjct 66776 AAAGATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTG 66835 Query 11745 AGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | | || || |||||| || || || || || || || ||| || || ||||| Sbjct 66836 A-AATTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTA 66894 Query 11804 CCCGTACCTGG 11814 || |||||||| Sbjct 66895 CCAGTACCTGG 66905 >seq3 Length=89890 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/316 (67%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| || || |||||||| | |||| ||| | || ||| | || ||||| Sbjct 49337 CGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGTCTGTTTGTGGCA 49278 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 |||| ||||||| || ||| ||||| || |||||||| || | | ||| Sbjct 49277 GCAAG---CACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTCAACAGCTGA 49221 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGC 11624 || || || || |||||||||||||| || | | ||| ||||||| || || | | Sbjct 49220 TTGATGGTCTGCTCTCTCTCATCATTACCT--CCTCCCATTCCAGCACCACGCTGTCTAC 49163 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 | || ||||| |||||||| ||||| | || ||||| || | ||| |||| | Sbjct 49162 CTACGGCATCGATCTCATCGATGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTTCGA 49103 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | || || || || | || |||||||| ||||||| ||| || || | || |||| Sbjct 49102 ACAGGTCACGGACACGGGATGCTCCCACACCCACAAACAGCTCTACGAATTCTGATGCAG 49043 Query 11745 AGCACTGGATGAATGG 11760 || || |||||| Sbjct 49042 CACAGGAGAAGAATGG 49027 >seq556 Length=75407 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/368 (66%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 182491 AGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCAT 182550 |||||| ||| | | ||| | ||| || ||||| |||||||| ||||| | ||| || Sbjct 29918 AGAAGTGGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGATCCATCGTGATCCTGAT 29859 Query 182551 CTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTT 182610 | ||||| ||||| | | ||||| || || ||||| | ||| | ||||| | Sbjct 29858 CCGTCATGATCATCAAGTGCCCATATCGCAGGGACTTGACATCCTCATAGACCTTTCCAT 29799 Query 182611 GTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTTTGATGTAAGCTG--TGC 182668 | || || || | |||| ||||| || |||| || ||| || | || | Sbjct 29798 GCTGGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTTGCCAGTGATTTGACTAG 29739 Query 182669 CACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATC 182728 ||| | || || ||||||||| |||| || ||||||||||| || ||||| |||| Sbjct 29738 CACTG--GCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATC 29681 Query 182729 ACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGAC 182788 | ||||| || || | ||| | || | | || || ||||| ||||| || | Sbjct 29680 TCTTCCAACAACTGACAAACCACTGATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAG 29621 Query 182789 AATGAGAGT--ACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTG 182846 ||||| || || ||||| | || | || ||||| | || || |||||||| || Sbjct 29620 GATGAGTGTGCACTCTTTCGAATTTCTTCC--TCCCGCATCATTTGCATCATCCAATTTT 29563 Query 182847 GGAATACC 182854 || ||||| Sbjct 29562 GGGATACC 29555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 181821 AGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAG 181880 ||||| |||||||| ||||| ||| ||||| ||| ||||||||||| || | || Sbjct 30582 AGACGAGTACCAAACTGACCTTGTGGAACAAGAGTGTTGATGTTGTTTGACCCAACAAAG 30523 Query 181881 TCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGAC 181940 | | |||| || |||||| |||||| || || || || || || || Sbjct 30522 TTCTGAGCCAGGCCGACAATGGTAGAGCAAAGGGAGTTCTCGCCATGATGATATGCAGAA 30463 Query 181941 TTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGG 182000 | || || ||||| | ||||| ||||||||||| || || ||||| || | | | Sbjct 30462 TGCTCGGCGACATACCCAGCCAATTGTGCCACCTTGATATCCGACTTGAGATTTCTTTTG 30403 Query 182001 AAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCCGCCATATGGGCAATA 182060 || ||||||||||| | |||||||| ||| || || || ||| || | | || Sbjct 30402 AAACAAGCATACATGATCTTCCTCTGTCCAGGTTTCAGCCCGTCCATGATGTTTGGGATC 30343 Query 182061 GAGCGCTTGAGGTCTGC 182077 ||||||| ||||| || Sbjct 30342 GAGCGCTCCAGGTCAGC 30326 >seq457 Length=513114 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||||| || || || ||||| || || | |||||||| | | |||| Sbjct 80563 CCCTCATCTCTAGAGATGAGCTCATTCGAAAACGTCAACCCTGGCATCAACAATCTCTTC 80504 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||||||||||||||| ||||| ||||| || ||| || || |||||||| |||||| Sbjct 80503 TTCAACCAATAAATAGAACAGAAAGACCCCGAAAAGTGAATCCCTTCCACACATGCAAAC 80444 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | ||||| || || | || || | || |||||| || ||||| Sbjct 80443 GCCACCAACCGTTCAGCAAAACACATTGA---TGACTGAATCCATTTGATCGCCCACGCA 80387 Query 122857 GCCTTCTTC 122865 ||||||||| Sbjct 80386 GCCTTCTTC 80378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025091648000