Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq457 172 7e-38 seq556 154 2e-32 seq3 105 8e-18 seq600 91.5 2e-13 >seq457 Length=513114 Score = 172 bits (190), Expect = 7e-38 Identities = 606/942 (64%), Gaps = 17/942 (2%) Strand=Plus/Plus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || || || || || || ||||| | || |||||| |||||||| || ||||| Sbjct 208491 GCAATGGATGCAAGGTTGCACACTGCAGTTTCATCCGGGCTTGTGTACTCAATGATTTCA 208550 Query 118770 GTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 ||||||||||| || | | |||| ||||||||||||| |||||| |||||| |||| Sbjct 208551 GTGCACAAGTTACTGGATT--TAATTGTGCCCAAGTTCTGTTGATTAGACTTTCTGTTGG 208608 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 | ||||||| | |||||||| || | |||||||| ||| | | ||| || || Sbjct 208609 CAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGGATGGCAA 208668 Query 118888 TCCAGACATCGGCAGCTGGCACAG--TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTT 118942 ||| | || | ||| | ||| || || || ||||| || || || Sbjct 208669 ACCAAA-----GCTGTTGGGCCTTGATGGACTTACGAGCACGTCCCTCGCGTTCATATTT 208723 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 || | ||||||| | ||| ||| | || | || || || || | || ||| Sbjct 208724 CAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCATTTGG 208783 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 || || | ||||| | || || | ||||||| | ||| ||||| ||||||||||| Sbjct 208784 ACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGATCCA 208843 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 | | | |||| | ||| | | |||||||| | || ||||| | ||| || Sbjct 208844 CAACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTC 208903 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC- 119181 | |||| | ||||| |||||||| || |||| ||||| || | | || || | Sbjct 208904 AAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTCT 208963 Query 119182 --GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 | || |||| | ||||| || || ||| | || || ||||| ||||| || | Sbjct 208964 CTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTAC 209023 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTG 119299 ||||||| || |||||||| || |||||| ||| | | ||||||| || || Sbjct 209024 AATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTATG 209083 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 || || ||| || |||||||| | ||| ||||| || |||||| | ||| || | Sbjct 209084 CATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGTC 209143 Query 119360 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 || || || || || ||| ||| | ||| | ||||| || | ||||| Sbjct 209144 ATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAGG 209203 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 119479 | || ||||| || ||||| |||||||| | || || ||||| | || |||| Sbjct 209204 GCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACAG 209263 Query 119480 CTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 | || ||| ||||| | | | || ||| | ||| ||| || || | || || | Sbjct 209264 CAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTGTGGATTCCAACTGAAACTCT 209323 Query 119540 CATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTT 119599 ||| | ||||| || || | |||| | ||||| || ||| | | || Sbjct 209324 CATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAATATGAACG 209383 Query 119600 CTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCG 119641 ||||| || |||| ||||||||| | ||||| | || || Sbjct 209384 CTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACG 209425 >seq556 Length=75407 Score = 154 bits (170), Expect = 2e-32 Identities = 317/464 (68%), Gaps = 23/464 (5%) Strand=Plus/Minus Query 179663 AGAAAGACTTTGACTGTGTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCA 179722 ||||||| | |||| | ||||| | ||||||||||||||| || | | | || | Sbjct 30008 AGAAAGAAATAGACTCCTTGCCCTTTGTAGCCTTGATGATTGGAGTGATGAATTCGATAA 29949 Query 179723 CAAACCCC---AACTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGAC 179779 ||| || | || || || ||||| |||||| ||| | | ||| | ||| || | Sbjct 29948 GAAAGCCTGGAATTTTCAGCAGAGATGGATAGAAGTGGTGCAAGAAATTCATGATAAGTC 29889 Query 179780 CCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAA 179839 |||||||||| || ||||||| |||| ||||||||| ||||| | | ||||| || | Sbjct 29888 CCTTAATGTGAGATCCATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCA 29829 Query 179840 GCTCGGA---AACATCTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGAT 179896 | ||| ||||| | ||| |||| || || || || ||||| |||| ||||| || Sbjct 29828 G---GGACTTGACATCCTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATAT 29772 Query 179897 CATTGAACTCTTGGTT-----TGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTT 179951 |||| ||| ||| |||| ||| | | ||||| |||||||| ||||| Sbjct 29771 TGTTGATTTCTGCGTTGCCAGTGATTTGACTAG---CACTG--GCATCTCGAACATTCAG 29717 Query 179952 ACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGC 180011 | || || || || ||||| || ||||| |||| | ||||| || || | |||| Sbjct 29716 CAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACT 29657 Query 180012 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGT--ACACTTTCCAGAT 180069 | || | | ||| || ||||| ||||| |||| |||||| || || ||||| | | Sbjct 29656 GATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAGGATGAGTGTGCACTCTTTCGAATT 29597 Query 180070 TGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 | | || |||| || | || || || ||||| || || ||||| Sbjct 29596 TCTTCC-TCCC-GCATCATTTGCATCATCCAATTTTGGGATACC 29555 >seq3 Length=89890 Score = 105 bits (116), Expect = 8e-18 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || || | || ||||||||| || |||||||| || | |||| || | || ||| Sbjct 49349 ACAGTCACCTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGT 49290 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || || | |||| || || || | | ||||| || |||||||| ||| Sbjct 49289 CTGTTTGTGGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTC 49230 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGC 14228 || || ||||||||||| || || | |||||||| | | | ||| || |||| | Sbjct 49229 AACAGCTGATTGATGGTCTGCTCTCTCTCATCATTACC--TCCTCCCATTCCAGCACCAC 49172 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG 14274 | || |||| ||||| || || ||||||||||||| ||| ||||| Sbjct 49171 GCTGTCTACCTACGGCATCGATCTCATCGATGAAAATGATGCATGG 49126 >seq600 Length=304360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 303/469 (65%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 ||| ||||| | ||||||||||| ||||| | || | ||||||| | |||||| || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || | || | || || || | ||||| ||||||||||| |||||||| || || Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGAC 14241 | ||||| || | ||| || || | | |||| | || || |||| || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGAT 14301 || ||||| |||||||| || || || || || ||| || ||| || || | Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361 ||| | ||| | ||||| ||||| |||||||| || || || | || | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 14362 TTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 ||| || ||| || || | || || || || || ||| || || ||||| || | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGC 14480 | |||||| || | | ||| || |||||| |||| ||| | | | | | Sbjct 66899 TACCTGGTGGGCCAACCAAGAGGCATCCCTTTGGGATTTTGGCGCCAACGGCTGTGAAAC 66958 Query 14481 GTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | || || | || | ||| ||||||||||| | || || | ||| || Sbjct 66959 GCTCTGGCTTCTTCAAGAATTCCACGATTTCCTGGAAATCCTGCTTTGC 67007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428397212800