Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq457 167 3e-36 seq232 165 9e-36 seq556 145 9e-30 seq600 132 6e-26 seq3 116 4e-21 >seq457 Length=513114 Score = 167 bits (184), Expect = 3e-36 Identities = 446/676 (66%), Gaps = 7/676 (1%) Strand=Plus/Minus Query 104155 TTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGT-GTCTTGA 104213 |||||||||| ||||||| || ||| ||| | | || || ||||| || | | Sbjct 209408 TTATTTTGGTTTCAAAACTCTGGAGCGTTCATATTTGCTCAGGGTCAATGGTCGTGTCG- 209350 Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| | |||||| ||||| ||||| | || | | || || || ||| | |||| Sbjct 209349 TGGAGAGGCCACAGCACATGCTCATGAGAGTTTCAGTTGGAATCCACAAGGAGAATATTG 209290 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 104333 || | | | | ||||||||| || | |||| || | ||||| || || | |||| Sbjct 209289 ATGCAGCCATTGAGACATACCACCTGCTGTCTCAGAGATGGTTCACGCATGCCTCTCCAA 209230 Query 104334 CCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACA 104393 | || |||||||| ||||| ||| | || || | || ||||| | ||| || | Sbjct 209229 CTCTGTTCAATGCCGGTACTCCACGCCCTCAGCTTTCTTCGTGCTTTTTGATCTGCATGA 209170 Query 104394 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 104453 || | || || | || || |||| ||||| | ||||||||| ||||| ||| Sbjct 209169 AGAATGATAGTATTGAAGGCATTTATGACACTCTGAAGGAGTGTGCTTGCATCTCCAAGA 209110 Query 104454 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 | || ||||| || || || || ||| || | ||||| | | ||| |||||| | Sbjct 209109 GTGCAGGGGGCATCGGTCTGTCTATGCATAATATCAGAGCGACTGGTTCTTATATTCGTG 209050 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | |||||||| || |||||||| | || ||||| || || || || | ||| || Sbjct 209049 GAACAAATGGAACTTCGAATGGTATTGTACCTATGCTCCGTGTGTTCAATGACACGGCCA 208990 Query 104574 GCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | ||||| |||| | ||| | |||| ||| | | || | || | ||||| | Sbjct 208989 GATATGTTGATCAGGGAGGGGGGAAGAGAAAAGGAGCGTTTGCCATGTACTTGGAGCCTT 208930 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||| ||||| | || | ||||| ||| | || || || | || || ||| Sbjct 208929 GGCACGCTGATATTTTCGACTGGCTTGAATTGAGGAAGAATCACGGCAAAGAAGAAGCGA 208870 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 || | ||| | |||| || | ||||| ||||||||||| ||| | || ||||| | Sbjct 208869 GGGCAAGAGATTTGTTCTACGGGTTGTGGATCCCAGATCTCTTTATGCAAAGGGTTGAAG 208810 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTG 104809 | || | ||||| | ||||||||| | | || |||||||| |||| ||| | | Sbjct 208809 CTGGAGGAGAGTGGTCCTTGTTTTGTCCAAATGAAGCCCCTGGTCTTGCCGACTGCTG-G 208751 Query 104810 GGTGAGGAGTTTGAAG 104825 || || | ||||||| Sbjct 208750 GGAGAACAATTTGAAG 208735 >seq232 Length=44964 Score = 165 bits (182), Expect = 9e-36 Identities = 305/435 (70%), Gaps = 17/435 (4%) Strand=Plus/Plus Query 94528 CTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATA-ACAACTTTGC 94586 || ||||||||||||| ||| ||||| || || ||||||| | || | ||| Sbjct 11335 CTTGCATTCTTTGCTGCATCTGATGGCATCGTAAATGAGAATTTGGGGGTACGATTTT-- 11392 Query 94587 TGATG-AGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGT--GTCATAATG 94642 ||| | ||||||| |||| | || || ||| | || |||| | || | ||| || Sbjct 11393 TGAAGGAGGTGCAGATCC-CAGAGGCCAGAGCTTTTTATGGATTCCAAATCGCCAT--TG 11449 Query 94643 AAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTG 94702 | | | ||| | |||| || ||| || | || | || || |||||| || || Sbjct 11450 AGAATATTCATAGCGAGATGTATAGTCTCCTGCTTGAGACATACATCAAGGATCCTGTTG 11509 Query 94703 AGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAA-AAGAAAGCGGAT 94761 | ||||| |||| || | |||||| | ||||| || || | || ||||| || ||| Sbjct 11510 AAAAGAACAAGCTGTTCCATGCCATCGAGACAGTACCA-GTGGTGAAGAAGAAGGCAGAT 11568 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCGACTCTTCGCATT 94820 ||||| |||| ||| |||| | | ||| | |||| || |||||| | | ||||| Sbjct 11569 TGGGCCATGAGATGGATTGAGTCCA----GCGATTCTTTCGCAGAGCGATTGGTTGCATT 11624 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 || || ||||| || || |||||||| || |||||||| || ||||| |||||||| || Sbjct 11625 CGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAA 11684 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 |||||| || | ||||| | |||||||||||| | ||||||||||| ||||| || Sbjct 11685 GCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCT 11744 Query 94941 CCACCAAGAGTTTGC 94955 |||| ||| ||||| Sbjct 11745 CCACACAGATTTTGC 11759 >seq556 Length=75407 Score = 145 bits (160), Expect = 9e-30 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 169127 TTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAA 169186 || || ||| ||| |||||| ||| | | ||| | || || ||||| ||||| || Sbjct 29934 TTCAGCAGAGATGGATAGAAGTGGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGAT 29875 Query 169187 CCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGA---AACA 169243 || |||| ||| ||||||||||||||| | | ||||| || || ||| ||| Sbjct 29874 CCATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCAG---GGACTTGACA 29818 Query 169244 TCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGG 169303 || | |||| |||| || || || || ||||| |||| ||||| || ||||| ||| | Sbjct 29817 TCCTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCG 29758 Query 169304 TTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGG 169363 || |||| || | || |||||| ||||||||| | || || ||||| ||| Sbjct 29757 TTGCCAGTGATTTGACTAGCACTGGCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGG 29698 Query 169364 AAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCC 169423 ||||| ||||| |||| | ||||| || || | ||| || || | | ||| || Sbjct 29697 AAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACTGATGGCCAATGACTTTGCA 29638 Query 169424 GAGTCACCCTCGGTGACGATGAGCGT--ACATTTTCCAGATTGTGCCGTACCCGCCTTGT 169481 || || ||||| || | |||||| || || |||| | || | || ||||| | | Sbjct 29637 GAATCTCCCTCTGTCAGGATGAGTGTGCACTCTTTCGAATTTCTTCC--TCCCGCATCAT 29580 Query 169482 TCGCATCATCCAATTTGGGAATACC 169506 | |||||||||||||| || ||||| Sbjct 29579 TTGCATCATCCAATTTTGGGATACC 29555 >seq600 Length=304360 Score = 132 bits (146), Expect = 6e-26 Identities = 251/367 (68%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| | ||||| || || || || | ||| | ||||||| | | ||||| || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || | || | |||||| || | | ||||| ||||||||||||||||| || ||||| Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 | ||||| || | ||| || || || | |||| | || || | || || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||||| || ||||| ||||| || ||| || || || || || Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||||| ||||| || || ||||| |||||||| || || || | | | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 ||| || ||| || || | || || ||||| || ||| |||||||||||||| | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 9882 TACCTGG 9888 ||||||| Sbjct 66899 TACCTGG 66905 >seq3 Length=89890 Score = 116 bits (128), Expect = 4e-21 Identities = 273/410 (67%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||| || ||||| ||||| | ||| ||| | || ||| | || || Sbjct 49341 CTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGTCTGTTTGT 49282 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || | |||| | |||||| | ||||| || |||||||||||||| || || Sbjct 49281 GGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTCAACAGCTG 49222 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9697 || || || || || | |||||||| || | | ||| ||||||| || || | Sbjct 49221 ATTGATGGTCTGCTCTCTCTCATCATTACCT--CCTCCCATTCCAGCACCACGCTGTCTA 49164 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || |||||||| |||||||| ||||| | ||||||||| || | || ||| Sbjct 49163 CCTACGGCATCGATCTCATCGATGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTTCG 49104 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || || || ||||| || |||||||| ||||||| ||| || || | || || Sbjct 49103 AACAGGTCACGGACACGGGATGCTCCCACACCCACAAACAGCTCTACGAATTCTGATGCA 49044 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 49043 GCACAGGAGAAGAATGGAGTTCCAGCCTCGCCAGCCACAGCCTTGGCGATCAACGTCTTA 48984 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || ||||| ||| | | ||| || || |||||||||||| || Sbjct 48983 CCTGTTCCTGGTGGACCGACCAAGAGAGCTCCCTTTGGAATCTTGGCACC 48934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254384131200