Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq232 154 2e-32 >seq232 Length=44964 Score = 154 bits (170), Expect = 2e-32 Identities = 362/541 (67%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | ||| |||||| | | || ||| |||| || | |||||| Sbjct 11222 TGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAAGAGGTTGATCTGGGAGGAGACA 11281 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||| | ||||| | ||| || ||||| ||||||||| || || || | Sbjct 11282 TCAAGCACTGGGAAGGATTGAATGACAACGAGAGACATTTCATCTCTCATGTGCTTGCAT 11341 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || || |||||| || || | || ||| | | | |||| ||||| | Sbjct 11342 TCTTTGCTGCATCTGATGGCATCGTAAATGAGAATTTGGGGGTACGATTTTTGAAGGAGG 11401 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 | ||||| | |||||| | | || || | | || ||| || ||| ||| || Sbjct 11402 TGCAGATCCCAGAGGCCAGAGCTTTTTATGGATTCCAAATCGC-CATTGAGAATATTCAT 11460 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||| ||| ||| || | || | | |||||||||| | || ||| Sbjct 11461 AGCGAGATGTATAGTCTCCTGCTTGAGACATACATCAAGGATCCTGTTGAAAAGAACAAG 11520 Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 ||||||| |||||| ||||| || | || || | || ||||| ||||||||| Sbjct 11521 CTGTTCCATGCCATCGAGACAGTACCAGTGGTGAAGAAGAAGGCAGATTGGGCCATGAGA 11580 Query 59952 TGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGG 60010 ||||| |||||| | | || || ||| | || | | || || || ||||| ||||| Sbjct 11581 TGGATTGAGTCCAGC-GATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGG 11639 Query 60011 AATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCC 60070 ||| |||||||| || || |||||||| |||| ||||||||||||||| || || | || Sbjct 11640 AATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCTGCTTCC 11699 Query 60071 GGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || ||| |||||||||||| |||| || || || ||||| ||||| || ||||| Sbjct 11700 AGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCACACAGATTTTGC 11759 Query 60131 A 60131 | Sbjct 11760 A 11760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518766227200