Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq556 165 9e-36 seq814 150 2e-31 seq457 149 7e-31 seq232 89.7 6e-13 >seq556 Length=75407 Score = 165 bits (182), Expect = 9e-36 Identities = 304/443 (69%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||| || || ||||| | || | || || | | || ||||||||| Sbjct 30777 CCTGTTCCGATACCTTCAGCTCCATTGACCAATACCAAGGGTAGAATCGGCACGTAGAAC 30718 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || || || | | | |||| || || ||| ||| | | || |||| || | || Sbjct 30717 TCTGGTTCAATCGTCTGACCCTCTTCATTGAGATACGTTAACAAGGCATCATCTCCTTGA 30658 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| ||| || | || | |||| |||||||||||||| || |||| |||||||| | Sbjct 30657 TGGAAAATGCTCCTCGTGATCTGTGCCAGGCGAGTGAAAATATATCGAGGGCTTGCAGAA 30598 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG-GTTCAGGTT 117390 || || || || |||||| ||||| || || || | | |||||| ||| | ||| Sbjct 30597 TCTTTCCCTCCTTGAAGACGAGTACCAAACTGACC-TTGTGGAACAAGAGTGTTGATGTT 30539 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| | || |||||||| ||||||| | |||||| ||| ||| ||| || Sbjct 30538 GTTTGACCCAACAAAGTTCTGAGCCAGGCCGACAATGGTAGAGCAAAGGGAGTTCTCGCC 30479 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||| ||||| || | ||||| || || || || |||| || |||||||| || || || Sbjct 30478 ATGATGATATGCAGAATGCTCGGCGACATACCCAGCCAATTGTGCCACCTTGATATCCGA 30419 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | || || | |||| || ||||| || | ||| | ||| | || ||||| || || Sbjct 30418 CTTGAGATTTCTTTTGAAACAAGCATACATGATCTTCCTCTGTCCAGGTTTCAGCCCGTC 30359 Query 117571 CGCCACGTGAGGGATCGAACGCT 117593 | | || |||||||| |||| Sbjct 30358 CATGATGTTTGGGATCGAGCGCT 30336 >seq814 Length=161544 Score = 150 bits (166), Expect = 2e-31 Identities = 409/619 (66%), Gaps = 18/619 (3%) Strand=Plus/Plus Query 158740 CGAAACGAAATCTTCCGCCGCCATCCCAACTGGTCTTGGGCCTTGCGCGCGTCACCTATG 158799 ||||| |||||||| | ||||||||| | ||||||||| | |||||| | Sbjct 132025 CGAAA-GAAATCTTGGGAGTCCATCCCAAGAGAGCTTGGGCCTCTGTTGGGTCACCAAGC 132083 Query 158800 AGCATATCCACCTCGGCGGGACGGTAAAACTCTGGATTCACCTTGATAATTGTTTGTCCG 158859 | |||| || || || || ||| | | ||||| ||||||| ||| | || ||| Sbjct 132084 AAAGTATCGACTTCTGCTGGGCGGAAGTATCTTGGATCGACCTTGACAATGGCTTTTCCA 132143 Query 158860 GTTGCCACGTCGACGCACGTCTCGTCGACGCCCGTGCCTGTCCAGCGGGTCGCGACGCCT 158919 || || | | | | | |||| || || || | |||| ||||||| | || ||| Sbjct 132144 GTCTCCTCATTAATTCCCTTCTCATCCACACCGGAGCCTTCCCAGCGGATTTTGATGCCG 132203 Query 158920 AGCTCGTCACATGCGAAAACAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATC 158979 ||||| || || | | | ||| || || | |||||| ||||||||| |||||| Sbjct 132204 AGCTCCTCGCAGGAAAGGTTGACAAATTCACGAACACTGTGCTGCTCTCCAGTTGCAATC 132263 Query 158980 ACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGC 159039 ||| | |||| ||| | ||| |||||||| |||||| |||||||||||||| | Sbjct 132264 ACATAATCCTTTGGTTCATCCTGCTGGAGCATCAGCCACTGCATCTCGACGTAATCCTTC 132323 Query 159040 GCGTGACCCCAGTCGCGCTTGGCATCCA-TGTTCCCGAGCTCGATGACTTTT-----CCA 159093 || || ||||| || | ||| ||||| | ||||| || | || | | ||| Sbjct 132324 GCATGCCCCCAATCTCTCTTCGCATCGAGATTTCCCAAGTACAGTGCATCATCCAAACCA 132383 Query 159094 GACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGTCACAAA-CTCTGCTCCGCG 159152 | ||| ||| |||||||| | |||||||| | |||||||| ||| | || | Sbjct 132384 GCCTTGATCC---TTGCCAGACCTCGTGTGATCTTCCTTGTCACAAATGTCT-CACCTCT 132439 Query 159153 CCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCG 159212 | | ||||| ||||| ||||| || || | || || |||| || ||||| | Sbjct 132440 CAGAGGGGACTCGTGGTTGAACAGGATACCATTGCAGGCAAACATACCGTACGACTCTCT 132499 Query 159213 GTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATA 159272 || || || |||||||| || || ||||| | | | ||||| || ||||| Sbjct 132500 ATAGTTGACGGTGATCCAGTACCCGAACAGCTTTGCTGCCGCATATGGCGAACGTGGATA 132559 Query 159273 AAATGGTGTCCCCTCATTTT---GAATTGGTTCCTGAACCTTTCCAAACATTTCACTCGT 159329 || ||||| | | |||| |||| ||||| ||||||||||||| ||| || Sbjct 132560 GAAAGGTGTGGTCACCTTTTGGGGAAT---CTCCTGCACCTTTCCAAACAGCTCAGAGGT 132616 Query 159330 CCCAGCCTGATAAAATTTG 159348 |||||||||||| ||| Sbjct 132617 GGAAGCCTGATAAAACTTG 132635 Score = 125 bits (138), Expect = 8e-24 Identities = 284/421 (67%), Gaps = 21/421 (5%) Strand=Plus/Plus Query 124490 GATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGA--ATC 124547 || ||| ||||| | |||||| ||| || || ||||||| |||| | || ||| Sbjct 132224 GACAAATTCACGAACACTGTGCTGCTCTCCAGTTGCAATCACATAATCCTTTGGTTCATC 132283 Query 124548 GACTGCTGCAACATAAGCCACATGGCT-TGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 |||||| | ||| |||||| || | | |||||| |||| || |||||||| || | Sbjct 132284 --CTGCTGGAGCATCAGCCAC-TGCATCTCGACGTAATCCTTCGCATGCCCCCAATCTCT 132340 Query 124607 CTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCC------GTCTTGTTCCACTCCGC 124660 ||| ||||| || ||||| | | | || | || | |||| ||| || Sbjct 132341 CTTCGCATCGAGATTTCCCAAGTACAGTGCATCATCCAAACCAGCCTTGATCCTT---GC 132397 Query 124661 CAAACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTG 124717 || ||| |||| ||||| | |||||||| ||| ||| | | |||||||| Sbjct 132398 CAGACCTCGTGTGATCTTCCTTGTCACAAATGTCTC---ACCTCTCAGAGGGGACTCGTG 132454 Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777 ||||||||| || ||| | || |||||||| ||||||||||| | ||||| || || Sbjct 132455 GTTGAACAGGATACCATTGCAGGCAAACATACCGTACGACTCTCTATAGTTGACGGTGAT 132514 Query 124778 CCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||| ||||| || ||||| | | |||| || || || ||||| || ||| | | Sbjct 132515 CCAGTACCCGAACAGCTTTGCTGCCGCATATGGCGAACGTGGATAGAAAGGTGTGGTCAC 132574 Query 124838 ATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTT 124897 ||||||| | | ||| | ||| ||||||| ||| || || |||||||| || || Sbjct 132575 CTTTTGGGGAATCTCCTGCACCTTTCCAAACAGCTCAGAGGTGGAAGCCTGATAAAACTT 132634 Query 124898 G 124898 | Sbjct 132635 G 132635 >seq457 Length=513114 Score = 149 bits (164), Expect = 7e-31 Identities = 468/705 (66%), Gaps = 20/705 (3%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||| ||| | ||||| |||||||| || ||||| | ||||||| | || Sbjct 209248 TTCACGCATGCCTCTCCAACTCTGTTCAATGCCGGTACTCCACGCCCTCAGCTTTCTTCG 209189 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||| || | |||||| |||| || || ||||| || || || || |||||| Sbjct 209188 TGCTTTTTGATCTGCATGAAGAATGATAGTATTGAAGGCATTTATGACACTCTGAAGGAG 209129 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGTCCGTGC 53451 ||||| |||||||||| | | || || |||||| | | ||| || || | || Sbjct 209128 TGTGCTTGCATCTCCAAGAGTGCAGGGGGCATCGGTCTGTCTATGCAT-AATATCAGAGC 209070 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || | || || || || || | ||| |||| || || ||||||||| Sbjct 209069 GACTGGTTCTTATATTCGTGGAACAAATGGAACTTCGA--ATGGTATTGTACCTATGCTC 209012 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || || ||||| |||||||| | || || | ||||| || |||||| | || || || Sbjct 209011 CGTGTGTTCAATGACACGGCCAGATATGTTGATCAGGGAGGGGGGAAGAGAAAAGGAGCG 208952 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||| ||| | ||||| |||||||| || ||| | || | || || || | | Sbjct 208951 TTTGCCATGTACTTGGAGCCTTGGCACGCTGATATTTTCGACTGGCTTGAATTGAGGAAG 208892 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCC--GTGACCTGTT-TACAGCTCTGTGGATTCCG 53686 ||||| || | || ||| ||| | | | || |||| ||| | | ||||||| || Sbjct 208891 AATCACGGCAAAGA--AGAAGCGAGGGCAAGAGATTTGTTCTACGGGT-TGTGGATCCCA 208835 Query 53687 GACCTCTTCATGCAAAAGG-TGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 || ||||| ||||||| || || || ||| || ||||||| | || | || || || || Sbjct 208834 GATCTCTTTATGCAAAGGGTTGAAGCTGGAGGA-GAGTGGTCCTTGTTTTGTCCAAATGA 208776 Query 53746 GTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 ||| || | | | | || || || || | ||| | || | ||| || || | Sbjct 208775 AGCCCCTGGTCTTGCCGACTG-CTGGGGAGAACAATTTGAAGAATTATATTTGAAATATG 208717 Query 53805 CAGTTCAGGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | |||| || | | | ||| ||||||| | || | ||| ||| |||||| Sbjct 208716 AACGCGAGGGACG-TGCTCGTAAGTCCATCAAGGCCCAACAGCTTTGGTTTGCCATCCTC 208658 Query 53864 AAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAA 53922 | ||| || || |||||||||| || |||||| || ||||||||| | |||| || Sbjct 208657 GA-AGCTCAAGTTGAGACGGGAAATCCTTACATGCTCTTCAAGGATTCTGCCAACAGAAA 208599 Query 53923 GAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 | || || ||||| | ||| || ||||| || ||||| || Sbjct 208598 GTCTAATCAACAGAACTTGGGCACAATTAAATCCAGTAACTTGTG 208554 >seq232 Length=44964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 317/487 (65%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | | || || | || || ||||| || | ||| | ||| Sbjct 11726 ATCAACTCGTTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATG 11667 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 ||||||||||| || |||||| || ||||| || || || || || || | || | Sbjct 11666 GCACAGAAGGATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCT 11607 Query 74904 GCGAACGGTGCATCG--GAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 ||||| | |||| | | || ||||| || ||||| || || || || ||| Sbjct 11606 GCGAA---AGAATCGCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACC 11550 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG-CCTTCTCTTCGGGATCCTTGACGAG 75019 | || || || ||||| || ||||| | ||||| ||| || | |||||||||| | Sbjct 11549 ACTGGTACTGTCTCGATGGCATGGAACA-GCTTGTTCTTTTCAACAGGATCCTTGATGTA 11491 Query 75020 CTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACG 75078 | |||| || || ||| |||| |||||| ||| || ||| ||| | Sbjct 11490 TGTCTCAAGCAGGAGACTATACATCTCGCTATGAATATTCTCAATG-GCGATTTGGAATC 11432 Query 75079 CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCT 75138 | || |||| | ||||||| ||||| || ||||| |||| | | | ||||| Sbjct 11431 CATAAAAAGCTCTGGCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCT 11372 Query 75139 CCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCT 75198 | | |||||||| || || || || || || || || || ||| || || | || Sbjct 11371 CATTTACGATGCCATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCT 11312 Query 75199 CATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 | | |||| | | | ||||| | ||| | ||| || ||| ||||| ||| || | | Sbjct 11311 CGTTGTCATTCAATCCTTCCCAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTG 11252 Query 75259 TCCAGAA 75265 ||||||| Sbjct 11251 TCCAGAA 11245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209980624000